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Information on SUBCLASS 3.3.1
Subclass Accession number: 3778
Subclass: 3.3.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 70

Average sequence ID (%) : 20.7 +/- 19.5
Average RMSD (Å) : 0.414 +/- 0.109

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hpXGpXh
(φψ)-conformation: bbpgpbb
Pattern: x[acfilmtv][dehknpqrst]x[gnt][cdehkqrstwy]x[acfgiklmtv]x
Conservation:-0.6210.505-0.424-0.2802.480-0.152-0.678-0.167-0.662
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ahs_A_2151ahs   A216224NVAAGDVVAEE-TT--EExbxxvxxbx
1b0u_A_191b0u   A2836QARAGDVISEE-TT-EEEbbxpvxbbb
1bd0_A_2531bd0   A256263KLQPGEKV.EE-TT-EE.bxbpgxbb.
1cb8_A_5021cb8   A503511KTGRGKITTEE-TT-EEEbxxxvbbbb
1cpt_*_3301cpt   -331339NIKRGDRIMEE-TT-EEEbxxpvxxbx
1cr5_A_1511cr5   A151159IFSPTQYLIEE-TT-EEExbbpvpbbb
1cx4_A_1691cx4   A172180LVKEGEHVIEE-TT-EEExbxpvxxab
1cx4_A_2911cx4   A294302VYNDGEQIIEE-TT-EEEbbxpvxxab
1d2e_A_2831d2e   A283291ILKKGDECEEEETT-EEEbbbpvxxbb
1dar_*_3341dar   -334342TLTSGSYVYEEESS-EEEbbbpvbbbb
1dar_*_3681dar   -368376ELKAGDLGAEEETT-EEEbbxpvbbbb
1ds6_B_981ds6   B100108VLKEGSEYREEETT-EEExbxpvxxbb
1dz4_A_3101dz4   A311319QLKKGDQILEE-TT-EEExbbpvxxbx
1e5d_A_1211e5d   A123131VVKHGETLSEE-TT-EEExbbpvxbbx
1efc_A_2351efc   A235243IIKVGEEVEEEETT-EEEbbbxvxxbb
1exm_A_2461exm   A246254KVKVGDEVEEEETT-EEEbbbpgxxbb
1eyq_A_1431eyq   A143151NFPPGASVFEE-TT-EEEbbxpgxbbb
1flr_H_111flr   H1119LVQPGRPMKEE-TT--EExbxpgxwbb
1fwx_A_5021fwx   A504512TVKEGDEVTEEETT-EEEbbbpvxxxb
1g6h_A_291g6h   A2937SVNKGDVTLEEETT-EEEbbxpvxxxb
1gtf_A_321gtf   A3745KLDKGEVLIEE-TT-EEExbxpvxbbb
1gtt_A_1821gtt   A182190EIQPGDRVREE-TT-EEExbbpvxbbb
1hn0_A_8091hn0   A812820TLQQGDWLIEE-TT-EEEbbbpvxbbb
1itw_A_2071itw   A215223SVQAGEIIDEE-TT-EEExbbxvxbbb
1iuz_*_181iuz   -2028SVAAGEAIEEE-TT-EEEbbxpvxxbb
1izo_A_3061izo   A307315EFKKGTSVLEE-TT-EEEbxbpvxxbb
1j3q_A_1181j3q   A122130EMEPGTIVYEE-TT-EEExbbpgxbbb
1jer_*_311jer   -3138.FRVGDSLQ.EETT-EEE.bbpgxbbb
1jj2_J_121jj2   J1219.LEKGSLIT.EETT-EEE.bbxvxbbx
1jny_A_2591jny   A259266.LKVGDKIV.EETT-EEE.bbpgpxbb
1jpz_A_3451jpz   A346354PLEKGDELMEE-TT-EEEwbbpvxxbb
1juh_A_2931juh   A294302ELGSGDVAFEE-TT-EEExbbpvxbbb
1kbl_A_4881kbl   A489497TFAEGDYISEEETT-EEExbbpgxxbb
1khu_A_3721khu   A373381KIPSGCSLKEE-TT-EEExbxpvxbbx
1khx_A_3741khx   A375383KIPPGCNLKEE-TT-EEExbxpvxbbx
1kmt_A_1021kmt   A103111VLKEGVEYREEETT-EEExbxpvxxbb
1ktj_A_271ktj   A2836IIHRGKPFQEEETTSEEExbxpvbxbx
1lfk_A_3001lfk   A301309EIKKGDSVIEE-TT-EEExxbpvxbbb
1lm8_V_1061lm8   V110118HSYRGHLWLEEETT-EEEbbbpvxbbb
1lrh_A_881lrh   A9199PFFQNTTFSEE-TT-EEEwbbpvbbbb
1n0u_A_4041n0u   A404412TVKSGQKVREEETT-EEEbxbxvbxbb
1n40_A_2971n40   A298306LVRKGELVLEE-TT-EEExxxpvxxbb
1ne6_A_1521ne6   A155163SFIAGETVIEE-TT-EEEbbbpvxbab
1ne6_A_2701ne6   A273281QFEDGQKIVEE-TT-EEEbbbpvxxab
1npl_A_31npl   A310ILYSGETL.EEETT-EE.bbxpvbbb.
1nxj_A_1391nxj   A140148TFVPGDIAYEE-TTSEEEbxbpgxbbb
1o4t_A_841o4t   A8795PIKAGDVCFEEETT-EEEwbbpvxbbb
1o4t_A_931o4t   A95103FTDSGESHSEE-TT-EEEbbxpvxbbb
1o5l_A_111o5l   A1422VFRKGEIVKEE-TT-EEEbbxpvxxab
1o5u_A_571o5u   A5967VIEKGDLVTEEETT-EEEbbbpvxbbb
1o7f_A_3921o7f   A396403TLHEGDDF.EEETT-EE.bbbpgxbb.
1ofn_A_1111ofn   A113121YLPVGVGHAEE-TT-EEExbxpvxxbb
1oru_A_1681oru   A169177AVYTGDEIEEEETT-EEExbbpvpxbb
1pmi_*_2661pmi   -270278GLNKGEAMFEE-TT-EEEbbxxvxbbb
1pmi_*_4031pmi   -404412KIDTGYVFFEEETT-EEExbxpvxbbx
1poc_*_401poc   -4047VMSAGESK.EE-TT-EE.bbxpvxbb.
1q3e_A_5341q3e   A537545VFQPGDYIIEE-TT-EEEbbbpvxxab
1q3e_A_5711q3e   A573580KLSDGSYF.EE-TT-EE.bbbpvbbb.
1q5d_A_3181q5d   A319327SIKKGEMVFEE-TT-EEExxxpvxxbx
1q5x_A_1361q5x   A137145TFFSGDHLYEE-TT-EEEbbbpgxbbb
1qcs_A_1291qcs   A129137AFSVGQQLVEEETT-EEExbbxvxbbb
1qqr_A_1831qqr   A187195TLAIGDTITEE-TT-EEEbbbpgxbbb
1qwr_A_2841qwr   A287295PLKKGDHFIEEETT-EEEObbpgxbbb
1qxr_A_1171qxr   A121129SMEPGTVVYEE-TT-EEExbbpgxbbx
1qxr_A_1271qxr   A129137YVPPYWAHREE-TT-EEExxxpvxxbb
1upi_A_1101upi   A112120YVSEGLAHGEE-TT-EEExbxxvbbbb
1vj2_A_751vj2   A7785TVEEGFYIFEEETT-EEExbbpgxbbb
1vj2_A_831vj2   A8593FVEPNEIHGEE-TT--EEbbxpvxxbb
2arc_A_622arc   A6573VCRPGDILLEE-TT-EEExbbpgxbbb
2arc_A_712arc   A7381LFPPGEIHHEE-TT--EEbbxpvxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b0u_A_191b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE H - 19
1b0u_A_191b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 21
1cpt_*_3301cpt   *     HEMPROTOPORPHYRIN IX CONTAINING FE L - 340
1cr5_A_1511cr5   A     NEN1-ETHYL-PYRROLIDINE-2,5-DIONE M - 160
1cr5_A_1511cr5   A     NEN1-ETHYL-PYRROLIDINE-2,5-DIONE E - 161
1cx4_A_1691cx4   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE I - 180
1cx4_A_2911cx4   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE I - 302
1eyq_A_1431eyq   A     NARNARINGENIN Y - 152
1gtf_A_321gtf   A     TRPTRYPTOPHAN H - 33
1gtf_A_321gtf   A     TRPTRYPTOPHAN H - 34
1gtf_A_321gtf   A     TRPTRYPTOPHAN S - 35
1gtf_A_321gtf   A     TRPTRYPTOPHAN E - 36
1gtf_A_321gtf   A     TRPTRYPTOPHAN L - 44
1gtf_A_321gtf   A     TRPTRYPTOPHAN A - 46
1gtf_A_321gtf   A     TRPTRYPTOPHAN Q - 47
1jpz_A_3451jpz   A     140N-PALMITOYLGLYCINE E - 352
1jpz_A_3451jpz   A     140N-PALMITOYLGLYCINE M - 354
1juh_A_2931juh   A     EDO1,2-ETHANEDIOL L - 295
1juh_A_2931juh   A     EDO1,2-ETHANEDIOL G - 296
1juh_A_2931juh   A     EDO1,2-ETHANEDIOL S - 297
1lm8_V_1061lm8   V     HYP4-HYDROXYPROLINE I - 109
1lm8_V_1061lm8   V     HYP4-HYDROXYPROLINE H - 110
1lm8_V_1061lm8   V     HYP4-HYDROXYPROLINE S - 111
1lm8_V_1061lm8   V     HYP4-HYDROXYPROLINE Y - 112
1lm8_V_1061lm8   V     HYP4-HYDROXYPROLINE H - 115
1lm8_V_1061lm8   V     HYP4-HYDROXYPROLINE W - 117
1lrh_A_881lrh   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 94
1lrh_A_881lrh   A     NAGN-ACETYL-D-GLUCOSAMINE N - 95
1lrh_A_881lrh   A     ZNZINC ION I - 100
1ne6_A_1521ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL I - 163
1ne6_A_2701ne6   A     SP16-(6-AMINO-PURIN-9-YL)-2-THIOXO-TETRAHYDRO-2-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL V - 281
1npl_A_31npl   A     PO4PHOSPHATE ION I - 3
1npl_A_31npl   A     PO4PHOSPHATE ION Y - 5
1npl_A_31npl   A     PO4PHOSPHATE ION S - 6
1npl_A_31npl   A     PO4PHOSPHATE ION G - 7
1npl_A_31npl   A     PO4PHOSPHATE ION E - 8
1o4t_A_931o4t   A     MNMANGANESE (II) ION H - 102
1o4t_A_931o4t   A     OXLOXALATE ION H - 102
1oru_A_1681oru   A     MSESELENOMETHIONINE T - 172
1oru_A_1681oru   A     MSESELENOMETHIONINE I - 176
1oru_A_1681oru   A     MSESELENOMETHIONINE E - 177
1oru_A_1681oru   A     MSESELENOMETHIONINE V - 178
1oru_A_1681oru   A     MSESELENOMETHIONINE H - 179
1pmi_*_2661pmi   *     ZNZINC ION L - 279
1poc_*_401poc   *     GEL1-O-OCTYL-2-HEPTYLPHOSPHONYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE V - 40
1q3e_A_5341q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE I - 545
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE M - 572
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE L - 574
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE Y - 579
1q3e_A_5711q3e   A     PCGCYCLIC GUANOSINE MONOPHOSPHATE F - 580
1q5d_A_3181q5d   A     EPB7,11-DIHYDROXY-8,8,10,12,16-PENTAMETHYL-3-[1-METHYL-2-(2-METHYL-THIAZOL-4-YL)VINYL]-4,17-DIOXABICYCLO[14.1.0]HEPTADECANE-5,9-DIONE F - 327
1qcs_A_1291qcs   A     MSESELENOMETHIONINE F - 130
1qcs_A_1291qcs   A     MSESELENOMETHIONINE F - 138
1qcs_A_1291qcs   A     MSESELENOMETHIONINE F - 140
1qwr_A_2841qwr   A     MSESELENOMETHIONINE L - 296
1qxr_A_1271qxr   A     NINICKEL (II) ION H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID H - 136
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID R - 137
1qxr_A_1271qxr   A     PA55-PHOSPHOARABINONIC ACID T - 138
1vj2_A_831vj2   A     MNMANGANESE (II) ION H - 92
1vj2_A_831vj2   A     MNMANGANESE (II) ION F - 94
2arc_A_712arc   A     ARAALPHA-L-ARABINOSE H - 80
2arc_A_712arc   A     ARAALPHA-L-ARABINOSE Y - 82
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gtf_A_321gtf   A AC1TRP BINDING SITE FOR CHAIN AQ - 47

Clusters included in this Subclass
CLUSTER: AR.4.3