ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.3.2

Subclass Accession number: 1704
Subclass: 3.3.2

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 28

Average sequence ID (%) : 18.0 +/- 19.1
Average RMSD (Å) : 0.593 +/- 0.139

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	hXXGpXh
(φψ)-conformation:	bbpgpbb

Pattern:	x	[afgilmvw]	[aegknqst]	x	[dgnqs]	[adegkqrs]	[acdpstv]	[afgikltv]	x
Conservation:	-0.840	0.317	-0.382	-0.683	2.512	-0.051	-0.319	-0.204	-0.351

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aoz_A_254	1aoz	A	255	263	DIYSGESYS	EE-TT-EEE	xbbpgxbbb
1aoz_A_36	1aoz	A	37	45	RANAGDSVV	EEETT-EEE	bbbxgxxbb
1cdy_*_2	1cdy	-	5	13	LGKKGDTVE	EEETTS-EE	bbbpvxbbb
1ehk_B_124	1ehk	B	126	134	EVLPGEVST	EE-TTB-EE	xbbxvbbxb
1f7d_A_26	1f7d	A	27	35	HLLPGEVKV	EE-TT-EEE	bbxpvxbbx
1flt_X_144	1flt	X	147	155	HMTEGRELV	EE-TTS-EE	xbbpvbxbb
1fwx_A_535	1fwx	A	538	546	EIGPQMTSS	EE-TT-EEE	xbxpvxbbb
1g6h_A_29	1g6h	A	29	37	SVNKGDVTL	EEETT-EEE	bbxpvxxxb
1gw0_A_69	1gw0	A	70	78	VANWGDTVE	EEETT-EEE	bbbpgxbbb
1h2k_A_260	1h2k	A	264	272	VVGPGDVLY	EE-TT-EEE	bxbpgxbbx
1h54_A_243	1h54	A	247	255	KLAPQASAE	EE-TT-EEE	bbxpvxbbb
1hn0_A_74	1hn0	A	78	86	KWKGGSSFT	EEETT-EEE	xbbpvxbbb
1hnf_*_7	1hnf	-	10	18	WGALGQDIN	EEETTS-EE	bbbpgbxbb
1iby_A_39	1iby	A	41	49	VVKKGDAVK	EEETT-EEE	bbbpvxxbb
1j58_A_130	1j58	A	133	141	YFPSGLPHS	EE-TT--EE	bbppvxxbb
1jmm_A_594	1jmm	A	599	607	LLERGQSAT	EE-TT-EEE	bbbpgxbbb
1juh_A_94	1juh	A	97	105	VLSSGDYGS	EEETT-EEE	bxbpvxbbb
1k3i_A_553	1k3i	A	553	561	SVKVGGRIT	EEETT-EEE	bbxpvxbbb
1k5c_A_197	1k5c	A	201	209	SIATGKHVS	EE-TT-EEE	wxbpvbbbb
1kv7_A_77	1kv7	A	79	87	KLQRGKAVT	EEETT-EEE	xbbpvbbbb
1oe1_A_227	1oe1	A	228	236	TAKVGETVL	EEETT-EEE	bbbpvxbbb
1oke_A_20	1oke	A	24	32	VLEHGSCVT	EE-TT-EEE	bbbpvbbbb
1p2z_A_78	1p2z	A	86	94	AVGDNRVLD	EE-TT--EE	xbxxlbbbx
1pe9_A_272	1pe9	A	273	281	GIGTSGSVL	EE-TT-EEE	bxxpUxbbb
1six_A_35	1six	A	36	44	ELAPGRRAL	EE-TT-EEE	bbxpvxbbb
1vh4_A_226	1vh4	A	234	242	LLAEDATAF	EE-TT-EEE	bbxxlbbbb
2cua_A_124	2cua	A	126	134	EVLPGEVST	EE-BTB-EE	xbbxvbbxb
2viu_A_229	2viu	A	236	244	IVKPGDVLV	EE-TT-EEE	bbxpvxbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aoz_A_36	1aoz	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 45
1aoz_A_254	1aoz	A	CUCOPPER (II) ION	G - 259
1aoz_A_254	1aoz	A	C2OCU-O-CU LINKAGE	G - 259
1gw0_A_69	1gw0	A	NAGN-ACETYL-D-GLUCOSAMINE	I - 82
1gw0_A_69	1gw0	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 84
1h2k_A_260	1h2k	A	FE2FE (II) ION	I - 273
1h2k_A_260	1h2k	A	OGAN-OXALYOLGLYCINE	I - 273
1hnf_*_7	1hnf	*	NAGN-ACETYL-D-GLUCOSAMINE	L - 13
1hnf_*_7	1hnf	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 18
1j58_A_130	1j58	A	MSESELENOMETHIONINE	D - 130
1j58_A_130	1j58	A	MSESELENOMETHIONINE	L - 131
1j58_A_130	1j58	A	MSESELENOMETHIONINE	W - 132
1j58_A_130	1j58	A	MNMANGANESE (II) ION	F - 134
1j58_A_130	1j58	A	MNMANGANESE (II) ION	H - 140
1j58_A_130	1j58	A	FMTFORMIC ACID	H - 140
1j58_A_130	1j58	A	MSESELENOMETHIONINE	I - 142
1j58_A_130	1j58	A	MNMANGANESE (II) ION	I - 142
1j58_A_130	1j58	A	FMTFORMIC ACID	I - 142
1j58_A_130	1j58	A	MSESELENOMETHIONINE	G - 148
1j58_A_130	1j58	A	MSESELENOMETHIONINE	A - 149
1j58_A_130	1j58	A	MSESELENOMETHIONINE	E - 150
1jmm_A_594	1jmm	A	MSESELENOMETHIONINE	G - 596
1jmm_A_594	1jmm	A	MSESELENOMETHIONINE	S - 597
1juh_A_94	1juh	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 97
1juh_A_94	1juh	A	CUCOPPER (II) ION	V - 106
1p2z_A_78	1p2z	A	CITCITRIC ACID	D - 94
2viu_A_229	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 242
2viu_A_229	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 244
2viu_A_229	2viu	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 246

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gw0_A_69	1gw0	A	DC9NAG BINDING SITE FOR CHAIN B	E - 78
1gw0_A_69	1gw0	A	AC7NAG BINDING SITE FOR CHAIN A	N - 84

Clusters included in this Subclass

CLUSTER: AR.4.13

CLUSTER: AR.5.17

CLUSTER: AR.6.48