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Information on SUBCLASS 4.3.1
Subclass Accession number: 3886
Subclass: 4.3.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 42

Average sequence ID (%) : 24.1 +/- 22.0
Average RMSD (Å) : 0.550 +/- 0.190

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hphXpXGX
(φψ)-conformation: bbpabpeb
Pattern: x[acfilvwy][akqrt][acfilmptv][deknpqrst][adeknqrt][adepst][G][ailmptv][fhivwy]x
Conservation:-0.543-0.351-0.092-0.341-0.422-0.235-0.2192.931-0.2980.236-0.666
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1adw_A_641adw   A6575TLTVTEPGLYGEEEE-S-EEEEbbbxaxxexbx
1ag6_*_691ag6   -7181KVTLTEKGTYKEEE--S-EEEEbbbbaxxebbx
1aoz_A_4891aoz   A494504RFVADNPGVWAEEE--S-EEEEbbxxabpebbx
1aoz_A_881aoz   A92102NFTVDNPGTFFEEE--S-EEEEbbbbabxexbb
1bdo_*_811bdo   -8292IVRSPMVGTFYEEE-SSSEEEEbxbxabxebxb
1bqk_*_641bqk   -6575KVTFTAPGVYGEEE--S-EEEExbxxaxxexbx
1bxu_A_691bxu   A7181EATFSEPGTYTEEE--S-EEEEbbbxabxebbb
1byp_A_691byp   A7181SVTLTEKGTYKEEEE-S-EEEEbbbbaxxebbb
1cwv_A_6581cwv   A662672PLTSTTLGVATEEE-SS-EEEExbbbabxebbb
1ex0_A_6881ex0   A694704VCRPWVSGHRKEE--SS-EEEExbbxabxexbb
1f00_I_7171f00   I721730TLTSTTPGKS.EEE-SS-EEE.bbbbabxexb.
1f1s_A_9491f1s   A949958.FKMNKAGLYL.EEE-S-EEEE.bbbabxebbb
1fwx_A_5441fwx   A548558TFVAANPGVYWEEE--S-EEEEbbbxabxexbb
1gw0_A_1211gw0   A126136RWRARQYGTSWEEE--S-EEEEbbxxabbebbb
1gyc_A_4361gyc   A440450RFQTDNPGPWFEEE--S-EEEEbbbxabpewbx
1hfu_A_4351hfu   A439449RFVTDNPGPWFEEE--S-EEEEbbbxabpewbx
1iby_A_781iby   A8292SFTADKAGAFTEEE--S-EEEEbbbxabxebbx
1id2_A_771id2   A8090AITFNEAGSYDEEEE-S-EEEEbbxbabpebbx
1itw_A_1861itw   A187197AALIGAPGSVKEEE--SSEEEEbbbxabpebbb
1iuz_*_691iuz   -7181VRKLSTPGVYGEEE--S-EEEEbbbbaxwebbx
1j9q_A_2871j9q   A292302FYTFQQPGIYAEEE--S-EEEEbbbxabxexbb
1jer_*_751jer   -7686IERLDELGMHYEEE--SSEEEEbbxbabxexbb
1kbv_A_1171kbv   A122132SFKALQPGLYIEEE--S-EEEEbbxxabxebbx
1kya_A_4381kya   A440450RFRTDNPGPWFEEE--S-EEEEbbbxabpewbx
1l0q_A_3521l0q   A352362THTYSETGIYTEE--SS-EEEEbbbxabxebbb
1m56_B_2361m56   B239249WFRAEREGIFFEEE-SS-EEEEbbbxabxebbb
1n7o_A_8511n7o   A851860.FQVLKRGVYT.EEE-SSEEEE.bbbabpebbb
1nif_*_1181nif   -123133RFKATKPGVFVEEE--S-EEEEbbxxabwebbx
1nif_*_2871nif   -292302FYTFRQPGVYAEEE--S-EEEEbbbxabxexbb
1o6u_A_3501o6u   A352362TLTCSDPGIYVEEEE-S-EEEEbbxxaxxebxb
1oe1_A_1121oe1   A117127RFKADRSGTFVEEE--S-EEEEbbxxabxexbx
1oe1_A_2811oe1   A286296LYTFKQPGVYAEEE--S-EEEEbbbxabxebxb
1paz_*_641paz   -6575VLTVTQPGAYLEEE--S-EEEEbbxbaxxebbb
1pcs_*_691pcs   -7181TSTFTEPGTYTEEE--S-EEEEbbbbabxebbx
1pg6_A_841pg6   A8797ALAPNTPGQIVEE--SSSB-EEbbbxabxebbb
1pmy_*_641pmy   -6575VVKFDKEGVYGEEE--S-EEEEbbxbaxxebbb
1qpo_A_401qpo   A4452SLVTREAGV..EEEESS-EE..bxbxabxeb..
2cua_A_1332cua   A136146RYTFKRPGEYREEE--S-EEEEbbbxabwebbb
2f3g_A_202f3g   A2131EIIAPLSGEIVEEE-SSSEEEEbxxpabxebpb
2gpr_*_132gpr   -1424KVLAPCDGTIIEEE-SSSEEEExbxxabxebxb
2plt_*_722plt   -7281.VKLTAAGEYG.EE--S-EEEE.bxbaxxebbx
7pcy_*_697pcy   -7181VRKLTTPGTYGEEE--S-EEEEbbbbaxwebbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_881aoz   A     NAGN-ACETYL-D-GLUCOSAMINE F - 90
1aoz_A_881aoz   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 91
1aoz_A_881aoz   A     NAGN-ACETYL-D-GLUCOSAMINE N - 92
1aoz_A_881aoz   A     CUCOPPER (II) ION F - 102
1aoz_A_881aoz   A     C2OCU-O-CU LINKAGE F - 102
1aoz_A_881aoz   A     CUCOPPER (II) ION H - 104
1aoz_A_881aoz   A     C2OCU-O-CU LINKAGE H - 104
1aoz_A_881aoz   A     C1OCU-O LINKAGE H - 104
1aoz_A_4891aoz   A     CUCOPPER (II) ION A - 504
1aoz_A_4891aoz   A     C2OCU-O-CU LINKAGE A - 504
1aoz_A_4891aoz   A     CUCOPPER (II) ION H - 506
1aoz_A_4891aoz   A     C2OCU-O-CU LINKAGE H - 506
1aoz_A_4891aoz   A     C1OCU-O LINKAGE H - 506
1aoz_A_4891aoz   A     CUCOPPER (II) ION C - 507
1bdo_*_811bdo   *     BTNBIOTIN Y - 92
1gw0_A_1211gw0   A     O2OXYGEN MOLECULE W - 136
1gw0_A_1211gw0   A     CUCOPPER (II) ION W - 136
1gw0_A_1211gw0   A     O2OXYGEN MOLECULE H - 138
1gw0_A_1211gw0   A     CUCOPPER (II) ION H - 138
1gw0_A_1211gw0   A     O2OXYGEN MOLECULE S - 139
1gyc_A_4361gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 436
1gyc_A_4361gyc   A     NAGN-ACETYL-D-GLUCOSAMINE T - 438
1gyc_A_4361gyc   A     CUCOPPER (II) ION F - 450
1gyc_A_4361gyc   A     CUCOPPER (II) ION H - 452
1gyc_A_4361gyc   A     CUCOPPER (II) ION C - 453
1hfu_A_4351hfu   A     CUCOPPER (II) ION F - 449
1hfu_A_4351hfu   A     CUCOPPER (II) ION H - 451
1hfu_A_4351hfu   A     CUCOPPER (II) ION C - 452
1j9q_A_2871j9q   A     NO2NITRITE ION V - 304
1kbv_A_1171kbv   A     CUCOPPER (II) ION I - 132
1kbv_A_1171kbv   A     CUCOPPER (II) ION H - 134
1kbv_A_1171kbv   A     NO2NITRITE ION H - 134
1nif_*_1181nif   *     CUCOPPER (II) ION V - 133
1nif_*_1181nif   *     CUCOPPER (II) ION H - 135
1nif_*_1181nif   *     MTOBOUND WATER H - 135
1o6u_A_3501o6u   A     MSESELENOMETHIONINE V - 362
1o6u_A_3501o6u   A     MSESELENOMETHIONINE R - 364
1oe1_A_1121oe1   A     PCAPYROGLUTAMIC ACID K - 119
1oe1_A_1121oe1   A     CUCOPPER (II) ION V - 127
1oe1_A_1121oe1   A     CUCOPPER (II) ION H - 129
1oe1_A_2811oe1   A     PG4TETRAETHYLENE GLYCOL V - 294
1oe1_A_2811oe1   A     PG4TETRAETHYLENE GLYCOL Y - 295
1oe1_A_2811oe1   A     PG4TETRAETHYLENE GLYCOL A - 296
1oe1_A_2811oe1   A     PG4TETRAETHYLENE GLYCOL L - 298
1pg6_A_841pg6   A     MSESELENOMETHIONINE L - 86
1pg6_A_841pg6   A     MSESELENOMETHIONINE A - 87
1pg6_A_841pg6   A     CACALCIUM ION A - 87
1pg6_A_841pg6   A     MSESELENOMETHIONINE L - 88
1pg6_A_841pg6   A     CACALCIUM ION L - 88
1pg6_A_841pg6   A     MSESELENOMETHIONINE A - 89
1pg6_A_841pg6   A     CACALCIUM ION A - 89
1pg6_A_841pg6   A     CACALCIUM ION P - 90
1pg6_A_841pg6   A     CACALCIUM ION N - 91
1pg6_A_841pg6   A     CACALCIUM ION T - 92
1pg6_A_841pg6   A     CACALCIUM ION P - 93
1pg6_A_841pg6   A     CACALCIUM ION G - 94
1pg6_A_841pg6   A     CACALCIUM ION Q - 95
2cua_A_1332cua   A     ZNZINC ION I - 148
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gw0_A_1211gw0   A DC9NAG BINDING SITE FOR CHAIN BR - 126
1gw0_A_1211gw0   A DC1SO4 BINDING SITE FOR CHAIN AR - 128
1gw0_A_1211gw0   A DC1SO4 BINDING SITE FOR CHAIN AR - 130
1gw0_A_1211gw0   A AC4CU BINDING SITE FOR CHAIN AW - 136
1gw0_A_1211gw0   A AC1O2 BINDING SITE FOR CHAIN AH - 138
1gyc_A_4361gyc   A NA6NAG BINDING SITE FOR CHAIN AN - 436
1gyc_A_4361gyc   A CU2CU BINDING SITE FOR CHAIN AH - 452
1gyc_A_4361gyc   A CU4CU BINDING SITE FOR CHAIN AC - 453
1hfu_A_4351hfu   A T1TYPE 1 CU BINDING SITE.C - 452
1oe1_A_1121oe1   A AC2CU BINDING SITE FOR CHAIN AH - 129
1oe1_A_2811oe1   A AC3PG4 BINDING SITE FOR CHAIN AA - 296

Clusters included in this Subclass
CLUSTER: AR.2.125
CLUSTER: AR.3.124
CLUSTER: AR.3.24
CLUSTER: AR.4.26
CLUSTER: AR.4.37
CLUSTER: AR.5.4
CLUSTER: AR.6.177