ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.14.1

Subclass Accession number: 6818
Subclass: 5.14.1

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 4

Average sequence ID (%) : 61.1 +/- 14.7
Average RMSD (Å) : 0.200 +/- 0.000

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 45-90

Consensus Sequence:	LXGGAGXDX
(φψ)-conformation:	bbaepepbb

Pattern:	x	[L]	[KW]	[G]	[G]	[A]	[G]	[AKN]	[D]	[ITV]	[FL]	[FVY]
Conservation:	-1.287	0.205	-0.486	1.202	1.202	0.205	1.202	-1.266	1.202	-0.818	-0.523	-0.836

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1kap_P_348	1kap	P	348	359	VLKGGAGNDILY	EEE--SS--EEE	bbbaexexxbbb
1kap_P_366	1kap	P	366	377	QLWGGAGADTFV	EEE--SS--EEE	bbbaexexbbbx
1sat_*_348	1sat	-	348	359	VLKGGAGNDVLF	EEE--SS--EEE	bbbaexexbbbb
1sat_*_366	1sat	-	366	377	ELWGGAGKDIFV	EEE--SS--EEE	bbbaexexbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kap_P_348	1kap	P	CACALCIUM ION	K - 350
1kap_P_348	1kap	P	CACALCIUM ION	G - 351
1kap_P_348	1kap	P	CACALCIUM ION	G - 352
1kap_P_348	1kap	P	CACALCIUM ION	A - 353
1kap_P_348	1kap	P	CACALCIUM ION	G - 354
1kap_P_348	1kap	P	CACALCIUM ION	N - 355
1kap_P_348	1kap	P	CACALCIUM ION	D - 356
1kap_P_348	1kap	P	CACALCIUM ION	Y - 359
1kap_P_366	1kap	P	CACALCIUM ION	W - 368
1kap_P_366	1kap	P	CACALCIUM ION	G - 369
1kap_P_366	1kap	P	CACALCIUM ION	G - 370
1kap_P_366	1kap	P	CACALCIUM ION	A - 371
1kap_P_366	1kap	P	CACALCIUM ION	G - 372
1kap_P_366	1kap	P	CACALCIUM ION	A - 373
1kap_P_366	1kap	P	CACALCIUM ION	D - 374
1kap_P_366	1kap	P	CACALCIUM ION	F - 376
1sat_*_366	1sat	*	CACALCIUM ION	K - 373

Clusters included in this Subclass

CLUSTER: AR.5.71