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Information on SUBCLASS 5.20.1
Subclass Accession number: 1900
Subclass: 5.20.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 2 (>50 %)  
GO : GO:0005529 (>75 %)  GO:0016829 (>50 %)  GO:0030145 (>75 %)  GO:0030246 (>75 %)  
SCOP : 49898 (>75 %)  49899 (>75 %)  49900 (>75 %)  51125 (>50 %)  51126 (>50 %)  
Number of loops: 3

Average sequence ID (%) : 10.0 +/- 10.0
Average RMSD (Å) : 0.733 +/- 0.252

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXXXpppXh
(φψ)-conformation: bbabplpbb
Pattern: [KTY][SV][IKL]x[QS][EHN][NQ]x[FVY]x
Conservation:-0.802-0.240-0.802-0.9191.1680.8411.750-0.6840.606-0.919
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1n62_B_1101n62   B110119KVLFQNQEVAEE-STT-EEEbbabxvpxab
1ofm_A_2451ofm   A248257TSKSQENVYYEEESBT-EEEbxabxlxbbb
1ru4_A_1571ru4   A158167YVIGSHNTFEEE-SSS-EEEbbaxblxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ofm_A_2451ofm   A     NGLACETYLGALACTOSAMINE-4-SULFATE E - 245
1ofm_A_2451ofm   A     NGLACETYLGALACTOSAMINE-4-SULFATE K - 250
1ofm_A_2451ofm   A     MANALPHA-D-MANNOSE Y - 257
1ofm_A_2451ofm   A     RAMRHAMNOSE Y - 257
1ofm_A_2451ofm   A     GCUD-GLUCURONIC ACID Y - 257
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofm_A_2451ofm   A AC8NGL BINDING SITE FOR CHAIN AE - 245
1ofm_A_2451ofm   A AC1MAN BINDING SITE FOR CHAIN AY - 257

Clusters included in this Subclass
CLUSTER: AR.5.127