Information on SUBCLASS 5.20.1 |
Subclass Accession number: 1900
Subclass: 5.20.1 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 2 (>50 %) GO : GO:0005529 (>75 %) GO:0016829 (>50 %) GO:0030145 (>75 %) GO:0030246 (>75 %) SCOP : 49898 (>75 %) 49899 (>75 %) 49900 (>75 %) 51125 (>50 %) 51126 (>50 %) |
Number of loops: 3 Average sequence ID (%) : 10.0 +/- 10.0 Average RMSD (Å) : 0.733 +/- 0.252 Consensus geometry
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Consensus Sequence: | pXXXpppXh |
(φψ)-conformation: | bbabplpbb |
Pattern: | [KTY] | [SV] | [IKL] | x | [QS] | [EHN] | [NQ] | x | [FVY] | x |
Conservation: | -0.802 | -0.240 | -0.802 | -0.919 | 1.168 | 0.841 | 1.750 | -0.684 | 0.606 | -0.919 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1n62_B_110 | 1n62 | B | 110 | 119 | KVLFQNQEVA | EE-STT-EEE | bbabxvpxab |
1ofm_A_245 | 1ofm | A | 248 | 257 | TSKSQENVYY | EEESBT-EEE | bxabxlxbbb |
1ru4_A_157 | 1ru4 | A | 158 | 167 | YVIGSHNTFE | EE-SSS-EEE | bbaxblxbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ofm_A_245 | 1ofm | A | NGLACETYLGALACTOSAMINE-4-SULFATE | E - 245 |
1ofm_A_245 | 1ofm | A | NGLACETYLGALACTOSAMINE-4-SULFATE | K - 250 |
1ofm_A_245 | 1ofm | A | MANALPHA-D-MANNOSE | Y - 257 |
1ofm_A_245 | 1ofm | A | RAMRHAMNOSE | Y - 257 |
1ofm_A_245 | 1ofm | A | GCUD-GLUCURONIC ACID | Y - 257 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1ofm_A_245 | 1ofm | A | AC8NGL BINDING SITE FOR CHAIN A | E - 245 |
1ofm_A_245 | 1ofm | A | AC1MAN BINDING SITE FOR CHAIN A | Y - 257 |
Clusters included in this Subclass |
CLUSTER: AR.5.127 |