Information on SUBCLASS 5.3.1 |
Subclass Accession number: 1872
Subclass: 5.3.1 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0004553 (>75 %) GO:0016798 (>50 %) SCOP : 49898 (>75 %) 49899 (>75 %) 49978 (>75 %) |
Number of loops: 13 Average sequence ID (%) : 10.0 +/- 12.6 Average RMSD (Å) : 1.038 +/- 0.338 Consensus geometry
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Consensus Sequence: | hXhXXXXXX |
(φψ)-conformation: | bbppaaabb |
Pattern: | [afilmv] | x | [aiklv] | [adepqst] | [dhpqst] | x | x | x | x | x |
Conservation: | 1.341 | -1.256 | 1.703 | 0.548 | -0.073 | -0.511 | -0.599 | -0.833 | -0.318 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1dpt_A_95 | 1dpt | A | 100 | 109 | FPLESWQIGK | EEE-GGG-EE | bxbbaaabxb |
1fjr_A_29 | 1fjr | A | 29 | 38 | LLVPAILTGE | EEE-GGGEEE | bxbxaaabbx |
1fp5_A_483 | 1fp5 | A | 483 | 492 | VQLPDARHST | EE--GGGEEE | bxxxaaabbb |
1g0x_A_143 | 1g0x | A | 145 | 153 | LNSQPHARG. | EE--GGGEE. | bxxxaaabb. |
1gtt_A_249 | 1gtt | A | 250 | 258 | FLKAPNTLT. | EEE-GGGEE. | bbbxaaaxb. |
1h54_A_97 | 1h54 | A | 97 | 106 | EPVDLAKDKI | EE--TTTSEE | bpxbaaaxxb |
1k7w_A_273 | 1k7w | A | 273 | 282 | LTLSDAFSTG | EE--GGG-EE | bbxxaaabbb |
1lug_A_31 | 1lug | A | 31 | 39 | VDIDTHTAK. | EE-TTT-EE. | bxxxaaaxb. |
1mve_A_210 | 1mve | A | 210 | 218 | VDLTDKNIY. | EEE-GGGEE. | bxxbaaabb. |
1n67_A_424 | 1n67 | A | 424 | 433 | ALIDQQNTSI | EE-STTT-EE | xbbbaaabbb |
1now_A_62 | 1now | A | 70 | 79 | LHLAPENFYI | EE--GGG-EE | bbbbaaabbb |
1p42_A_44 | 1p42 | A | 46 | 55 | IPARHEFVVH | EESSGGGEEE | bxxbaaaxab |
1pfv_A_134 | 1pfv | A | 134 | 143 | MFLPDRFVKG | EE--GGGEEE | bxbxaaabbe |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1fjr_A_29 | 1fjr | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 30 |
1fjr_A_29 | 1fjr | A | NAGN-ACETYL-D-GLUCOSAMINE | P - 32 |
1fjr_A_29 | 1fjr | A | NAGN-ACETYL-D-GLUCOSAMINE | A - 33 |
1gtt_A_249 | 1gtt | A | CACALCIUM ION | F - 250 |
1k7w_A_273 | 1k7w | A | AS1ARGININOSUCCINATE | T - 281 |
1k7w_A_273 | 1k7w | A | AS1ARGININOSUCCINATE | G - 282 |
1k7w_A_273 | 1k7w | A | AS1ARGININOSUCCINATE | A - 283 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | D - 211 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | L - 212 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | T - 213 |
1mve_A_210 | 1mve | A | MSESELENOMETHIONINE | Y - 218 |
1now_A_62 | 1now | A | NAGN-ACETYL-D-GLUCOSAMINE | M - 65 |
1now_A_62 | 1now | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 66 |
1now_A_62 | 1now | A | NAGN-ACETYL-D-GLUCOSAMINE | P - 67 |
1now_A_62 | 1now | A | NAGN-ACETYL-D-GLUCOSAMINE | N - 68 |
1now_A_62 | 1now | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 69 |
Clusters included in this Subclass |
CLUSTER: AR.4.57 |
CLUSTER: AR.5.48 |
CLUSTER: AR.6.61 |
CLUSTER: AR.6.65 |