Information on SUBCLASS 5.4.1 |
Subclass Accession number: 1874
Subclass: 5.4.1 Type: AR beta-beta link DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.4.25 (>75 %) 3.4.25.1 (>75 %) GO : GO:0005529 (>50 %) GO:0005529 (>75 %) GO:0030246 (>50 %) GO:0030246 (>75 %) SCOP : 56234 (>75 %) 56235 (>75 %) 56251 (>75 %) 56435 (>75 %) 56435 (>75 %) 56436 (>75 %) 56436 (>75 %) 56437 (>75 %) 56437 (>75 %) |
Number of loops: 12 Average sequence ID (%) : 14.2 +/- 16.1 Average RMSD (Å) : 0.583 +/- 0.397 Consensus geometry
|
Consensus Sequence: | pXXhXpXXh |
(φψ)-conformation: | bbpaappbb |
Pattern: | [dnqrty] | x | x | [cq] | [adegrst] | [DEGNQRST] | [adekqr] | x | x | [cfvy] |
Conservation: | -0.309 | -0.616 | -0.687 | 2.653 | -0.291 | 0.195 | -0.087 | -0.604 | -0.621 | 0.366 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1byf_A_105 | 1byf | A | 108 | 117 | DVGCGGARRV | EE-S-S-EEE | xbxaaxxbxb |
1gz2_A_125 | 1gz2 | A | 127 | 136 | ARPCTERNAF | EE-TT--EEE | xbxaaxxbxb |
1h8u_A_102 | 1h8u | A | 104 | 113 | RAHCLRRLPF | EE-TTS-EEE | xbxaaxbbwb |
1hq8_A_213 | 1hq8 | A | 216 | 225 | TEDCANLNTY | EE-TTS-EEE | xbxaaxxbxb |
1j34_A_115 | 1j34 | A | 116 | 125 | NIYCGQQNPF | EE-TTS-EEE | xbxaaxxbwb |
1jzn_A_118 | 1jzn | A | 120 | 129 | DQVCESKDAF | EE-TTS-EEE | xbxaaxxbxb |
1qdd_A_127 | 1qdd | A | 129 | 138 | DVPCEDKFSF | EE-TTS-EEE | xbxaaxbbxb |
1qo3_C_240 | 1qo3 | C | 242 | 251 | NGNCDQVFIC | EE-TTS-EEE | xbxaaxbbpb |
1tdt_A_207 | 1tdt | A | 207 | 216 | YLGQSTRIYD | EE-TT--EEE | bbbaaxxbxx |
1tn3_*_162 | 1tn3 | - | 165 | 174 | DKRCRDQLPY | EE-TTS-EEE | xbxaaxbbwb |
1vio_A_40 | 1vio | A | 40 | 49 | QISQEDEIYF | EE-TTS-EEE | xbbaaxbbbb |
1vj0_A_140 | 1vj0 | A | 142 | 151 | VLDPETDVLK | EE-TT--EEE | bxxaapxbbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1byf_A_105 | 1byf | A | CAACARBOHYDRATE BINDING CALCIUM SITE | D - 107 |
1byf_A_105 | 1byf | A | CAACARBOHYDRATE BINDING CALCIUM SITE | D - 108 |
1tn3_*_162 | 1tn3 | * | CA2CALCIUM BINDING SITE 2. | D - 165 |
Clusters included in this Subclass |
CLUSTER: AR.6.6 |