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Information on SUBCLASS 5.4.1
Subclass Accession number: 1874
Subclass: 5.4.1 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4.25 (>75 %)  3.4.25.1 (>75 %)  
GO : GO:0005529 (>50 %)  GO:0005529 (>75 %)  GO:0030246 (>50 %)  GO:0030246 (>75 %)  
SCOP : 56234 (>75 %)  56235 (>75 %)  56251 (>75 %)  56435 (>75 %)  56435 (>75 %)  56436 (>75 %)  56436 (>75 %)  56437 (>75 %)  56437 (>75 %)  
Number of loops: 12

Average sequence ID (%) : 14.2 +/- 16.1
Average RMSD (Å) : 0.583 +/- 0.397

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXXhXpXXh
(φψ)-conformation: bbpaappbb
Pattern: [dnqrty]xx[cq][adegrst][DEGNQRST][adekqr]xx[cfvy]
Conservation:-0.309-0.616-0.6872.653-0.2910.195-0.087-0.604-0.6210.366
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byf_A_1051byf   A108117DVGCGGARRVEE-S-S-EEExbxaaxxbxb
1gz2_A_1251gz2   A127136ARPCTERNAFEE-TT--EEExbxaaxxbxb
1h8u_A_1021h8u   A104113RAHCLRRLPFEE-TTS-EEExbxaaxbbwb
1hq8_A_2131hq8   A216225TEDCANLNTYEE-TTS-EEExbxaaxxbxb
1j34_A_1151j34   A116125NIYCGQQNPFEE-TTS-EEExbxaaxxbwb
1jzn_A_1181jzn   A120129DQVCESKDAFEE-TTS-EEExbxaaxxbxb
1qdd_A_1271qdd   A129138DVPCEDKFSFEE-TTS-EEExbxaaxbbxb
1qo3_C_2401qo3   C242251NGNCDQVFICEE-TTS-EEExbxaaxbbpb
1tdt_A_2071tdt   A207216YLGQSTRIYDEE-TT--EEEbbbaaxxbxx
1tn3_*_1621tn3   -165174DKRCRDQLPYEE-TTS-EEExbxaaxbbwb
1vio_A_401vio   A4049QISQEDEIYFEE-TTS-EEExbbaaxbbbb
1vj0_A_1401vj0   A142151VLDPETDVLKEE-TT--EEEbxxaapxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1byf_A_1051byf   A     OC6CALCIUM ION, 6 WATERS COORDINATED L - 105
1byf_A_1051byf   A     CACALCIUM ION D - 107
1byf_A_1051byf   A     ACTACETATE ION D - 107
1byf_A_1051byf   A     GOLGLYCEROL D - 107
1byf_A_1051byf   A     CACALCIUM ION D - 108
1byf_A_1051byf   A     GOLGLYCEROL D - 108
1byf_A_1051byf   A     CACALCIUM ION V - 109
1byf_A_1051byf   A     ACTACETATE ION V - 109
1byf_A_1051byf   A     GOLGLYCEROL V - 109
1byf_A_1051byf   A     ACTACETATE ION A - 114
1byf_A_1051byf   A     ZNZINC ION R - 115
1byf_A_1051byf   A     ACTACETATE ION R - 115
1j34_A_1151j34   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID N - 116
1j34_A_1151j34   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID Q - 121
1j34_A_1151j34   A     CACALCIUM ION E - 128
1jzn_A_1181jzn   A     GLCGLUCOSE N - 119
1jzn_A_1181jzn   A     GALD-GALACTOSE N - 119
1jzn_A_1181jzn   A     CACALCIUM ION N - 119
1jzn_A_1181jzn   A     GALD-GALACTOSE D - 120
1jzn_A_1181jzn   A     CACALCIUM ION D - 120
1jzn_A_1181jzn   A     GALD-GALACTOSE Q - 121
1jzn_A_1181jzn   A     CACALCIUM ION Q - 121
1jzn_A_1181jzn   A     GALD-GALACTOSE V - 122
1qo3_C_2401qo3   C     EDO1,2-ETHANEDIOL N - 244
1tn3_*_1621tn3   *     CACALCIUM ION F - 164
1tn3_*_1621tn3   *     CACALCIUM ION D - 165
1tn3_*_1621tn3   *     CACALCIUM ION K - 166
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1byf_A_1051byf   A CAACARBOHYDRATE BINDING CALCIUM SITED - 107
1byf_A_1051byf   A CAACARBOHYDRATE BINDING CALCIUM SITED - 108
1tn3_*_1621tn3   * CA2CALCIUM BINDING SITE 2.D - 165

Clusters included in this Subclass
CLUSTER: AR.6.6