Logo
Information on SUBCLASS 5.4.1
Subclass Accession number: 3997
Subclass: 5.4.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 18.1 +/- 20.2
Average RMSD (Å) : 0.574 +/- 0.392

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXXhXppXh
(φψ)-conformation: bbpaappbb
Pattern: [adknqrst]xx[ckq][aegnrst][degknqrst][adegknqrst]xx[afpvwy]
Conservation:-0.091-0.178-0.4812.803-0.308-0.425-0.113-0.616-0.416-0.175
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1byf_A_1051byf   A108117DVGCGGARRVEE-S-S-EEExbxaaxxbxb
1c3a_A_1171c3a   A118127NVYCGTENPEEE-TTS-EEExbxaapxbxb
1e87_A_1801e87   A183192SMECEKNLYWEE-TTS-BEEbbpaaxxbxb
1fvu_A_1151fvu   A117126NLYCAQKNPFEE-TT--EEExbxaaxbbwb
1g1s_A_1041g1s   A106115DEHCLKKKHAEE-TTS-EEExbxaaxxbxx
1giq_A_1541giq   A159168KLPKNTGMLPEE-TT-B-EExxpaaxxbbw
1gz2_A_1251gz2   A127136ARPCTERNAFEE-TT--EEExbxaaxxbxb
1h8u_A_1021h8u   A104113RAHCLRRLPFEE-TTS-EEExbxaaxbbwb
1hq8_A_2131hq8   A216225TEDCANLNTYEE-TTS-EEExbxaaxxbxb
1hup_*_2111hup   -213222DVPCSTSHLAEE-TTSEEEExbxaaxbbxx
1i7a_A_541i7a   A6069TITPNMTFTKEE-TT--EEExxbaaxbbbx
1ile_*_2401ile   -241250AVHPEYTYAAEE-TTS-EEEbbxaaxbxxb
1iod_A_1151iod   A116125NFYCEQQDPFEE-TTS-EEExbxaaxbbwb
1ixx_A_1151ixx   A116125NIYCGQQNPFEE-TT--EEExbxaaxbbwb
1j34_A_1151j34   A116125NIYCGQQNPFEE-TTS-EEExbxaaxxbwb
1jwi_A_1121jwi   A114123DLPCGEKNPFEE-TTS-EEExbxaaxxbwb
1jzn_A_1181jzn   A120129DQVCESKDAFEE-TTS-EEExbxaaxxbxb
1oz7_B_1051oz7   B108117RRDCTWTFSFEE-TTS-EEEbbpaaxbbxb
1qdd_A_1271qdd   A129138DVPCEDKFSFEE-TTS-EEExbxaaxbbxb
1r13_A_2131r13   A215224DRGCLQYRLAEE-S-S-EEExbxaaxbbxx
1tdt_A_2071tdt   A207216YLGQSTRIYDEE-TT--EEEbbbaaxxbxx
1tn3_*_1621tn3   -165174DKRCRDQLPYEE-TTS-EEExbxaaxbbwb
1ukm_A_1161ukm   A118127NINCEDLYPFEE-TTS-EEExbxaaxbbwb
1umr_A_1171umr   A118127VASCIGKIPFEE-TT--EEExbpaaxbbwb
1uv0_A_1321uv0   A134143DYNCNVRLPYEE-TTS-EEExbpaaxxbwb
1vio_A_401vio   A4049QISQEDEIYFEE-TTS-EEExbbaaxbbbb
1vj0_A_1401vj0   A142151VLDPETDVLKEE-TT--EEEbxxaapxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1byf_A_1051byf   A     OC6CALCIUM ION, 6 WATERS COORDINATED L - 105
1byf_A_1051byf   A     CACALCIUM ION D - 107
1byf_A_1051byf   A     ACTACETATE ION D - 107
1byf_A_1051byf   A     GOLGLYCEROL D - 107
1byf_A_1051byf   A     CACALCIUM ION D - 108
1byf_A_1051byf   A     GOLGLYCEROL D - 108
1byf_A_1051byf   A     CACALCIUM ION V - 109
1byf_A_1051byf   A     ACTACETATE ION V - 109
1byf_A_1051byf   A     GOLGLYCEROL V - 109
1byf_A_1051byf   A     ACTACETATE ION A - 114
1byf_A_1051byf   A     ZNZINC ION R - 115
1byf_A_1051byf   A     ACTACETATE ION R - 115
1e87_A_1801e87   A     GOLGLYCEROL C - 186
1e87_A_1801e87   A     GOLGLYCEROL E - 187
1e87_A_1801e87   A     GOLGLYCEROL N - 189
1e87_A_1801e87   A     ZNZINC ION K - 196
1g1s_A_1041g1s   A     GALD-GALACTOSE N - 105
1g1s_A_1041g1s   A     FUCFUCOSE N - 105
1g1s_A_1041g1s   A     SRSTRONTIUM ION N - 105
1g1s_A_1041g1s   A     FUCFUCOSE D - 106
1g1s_A_1041g1s   A     SRSTRONTIUM ION D - 106
1g1s_A_1041g1s   A     GALD-GALACTOSE E - 107
1g1s_A_1041g1s   A     NAGN-ACETYL-D-GLUCOSAMINE E - 107
1g1s_A_1041g1s   A     FUCFUCOSE E - 107
1g1s_A_1041g1s   A     SRSTRONTIUM ION E - 107
1g1s_A_1041g1s   A     TYSSULFONATED TYROSINE L - 110
1g1s_A_1041g1s   A     TYSSULFONATED TYROSINE K - 111
1g1s_A_1041g1s   A     GALD-GALACTOSE K - 111
1g1s_A_1041g1s   A     NAGN-ACETYL-D-GLUCOSAMINE K - 111
1g1s_A_1041g1s   A     FUCFUCOSE K - 111
1g1s_A_1041g1s   A     TYSSULFONATED TYROSINE K - 112
1g1s_A_1041g1s   A     TYSSULFONATED TYROSINE K - 113
1g1s_A_1041g1s   A     GALD-GALACTOSE K - 113
1g1s_A_1041g1s   A     TYSSULFONATED TYROSINE H - 114
1g1s_A_1041g1s   A     MPD2-METHYL-2,4-PENTANEDIOL Y - 118
1hup_*_2111hup   *     CACALCIUM ION N - 212
1hup_*_2111hup   *     CACALCIUM ION D - 213
1hup_*_2111hup   *     CACALCIUM ION V - 214
1i7a_A_541i7a   A     FLCCITRATE ANION N - 58
1i7a_A_541i7a   A     FLCCITRATE ANION S - 59
1i7a_A_541i7a   A     FLCCITRATE ANION T - 60
1iod_A_1151iod   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID N - 116
1iod_A_1151iod   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID F - 117
1iod_A_1151iod   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID Q - 121
1iod_A_1151iod   A     CACALCIUM ION Q - 121
1iod_A_1151iod   A     CACALCIUM ION E - 128
1jzn_A_1181jzn   A     GLCGLUCOSE N - 119
1jzn_A_1181jzn   A     GALD-GALACTOSE N - 119
1jzn_A_1181jzn   A     CACALCIUM ION N - 119
1jzn_A_1181jzn   A     GALD-GALACTOSE D - 120
1jzn_A_1181jzn   A     CACALCIUM ION D - 120
1jzn_A_1181jzn   A     GALD-GALACTOSE Q - 121
1jzn_A_1181jzn   A     GALD-GALACTOSE V - 122
1r13_A_2131r13   A     CACALCIUM ION N - 214
1r13_A_2131r13   A     CACALCIUM ION D - 215
1r13_A_2131r13   A     CACALCIUM ION R - 216
1r13_A_2131r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 216
1r13_A_2131r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Y - 221
1r13_A_2131r13   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 222
1tn3_*_1621tn3   *     CACALCIUM ION F - 164
1tn3_*_1621tn3   *     CACALCIUM ION D - 165
1tn3_*_1621tn3   *     CACALCIUM ION K - 166
1ukm_A_1161ukm   A     CRYPROPANE-1,2,3-TRIOL N - 117
1ukm_A_1161ukm   A     CRYPROPANE-1,2,3-TRIOL N - 118
1ukm_A_1161ukm   A     CRYPROPANE-1,2,3-TRIOL I - 119
1uv0_A_1321uv0   A     ZNZINC ION K - 146
1uv0_A_1321uv0   A     ZNZINC ION F - 147
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1byf_A_1051byf   A CAACARBOHYDRATE BINDING CALCIUM SITED - 107
1byf_A_1051byf   A CAACARBOHYDRATE BINDING CALCIUM SITED - 108
1ixx_A_1151ixx   A S1CALCIUM-BINDING SITE.E - 128
1tn3_*_1621tn3   * CA2CALCIUM BINDING SITE 2.D - 165

Clusters included in this Subclass
CLUSTER: AR.4.27
CLUSTER: AR.5.18
CLUSTER: AR.6.16
CLUSTER: AR.6.19