ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 6.1.1

Subclass Accession number: 6837
Subclass: 6.1.1

PSSM

Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 19.1 +/- 26.5
Average RMSD (Å) : 0.958 +/- 0.198

Consensus geometry

d (Å): 15

delta (°): 45-90

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	hXXhphcpXX
(φψ)-conformation:	bbppbpgpbb

Pattern:	[EGKST]	[AFGV]	[adgkrs]	[anpstv]	[AILPW]	[hkqrty]	[APSTV]	[cgn]	[EKMQ]	[agstv]	x	x	x
Conservation:	0.479	-0.056	-0.799	-0.486	-0.935	-0.491	0.415	1.171	2.649	-0.354	-0.693	-0.773	-0.128

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cdo_A_22	1cdo	A	27	39	EVDVPHANEIRIK	EE----TTEEEEE	bbxxxxpvbbbbx
1d1t_A_22	1d1t	A	27	39	EVAPPKTKEVRIK	EE----TTEEEEE	bbpxxxxlbbxbx
1e3i_A_22	1e3i	A	27	39	EVSPPKACEVRIQ	EE----TTEEEEE	bbpxxxpvbbxbx
1hpg_A_126	1hpg	A	126	138	SAANAVVGQAIKK	EE----TT-EEEE	bbbxxbpvxxbbb
1lvo_A_101	1lvo	A	101	113	KFKSIKAGESFNI	EE----TT-EEEE	bbbxxbpvxxbbb
1n8k_A_22	1n8k	A	27	39	EVAPPKAHEVRIK	EE----TTEEEEE	bbxxxxpvbbbbx
1nrz_A_102	1nrz	A	106	118	GGMAWRPGKKQLT	EEB---TT-EEEE	abbxxbpgxbxab
1p9s_A_100	1p9s	A	101	113	SFRTLKSGEGFNI	EE----TT--EEE	bbbxxbpvxxbbb
1sgp_E_126	1sgp	E	126	138	SAANATVGMAVTR	EE----TT-EEEE	bbbxxbxvxxbbb
1uj1_A_100	1uj1	A	102	114	KFVRIQPGQTFSV	EE----TT-EEEE	bbbbxxpgxbbxb
2sfa_*_93	2sfa	-	93	105	GAGNAYVGQTVQR	EE----TT-EEEE	bbbxbbxvxxbbb
2sga_*_126	2sga	-	126	138	TAGNAFVGQAVQR	EE----TT-EEEE	bbbbxbxvxxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1lvo_A_101	1lvo	A	DOXDIOXANE	I - 105
1lvo_A_101	1lvo	A	DOXDIOXANE	K - 106
1lvo_A_101	1lvo	A	DOXDIOXANE	A - 107
1lvo_A_101	1lvo	A	DOXDIOXANE	S - 110
1lvo_A_101	1lvo	A	DOXDIOXANE	F - 111
1lvo_A_101	1lvo	A	DOXDIOXANE	N - 112
1lvo_A_101	1lvo	A	DOXDIOXANE	A - 115
1lvo_A_101	1lvo	A	DOXDIOXANE	C - 116
1lvo_A_101	1lvo	A	DOXDIOXANE	Y - 117
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	L - 105
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	K - 106
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	S - 107
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	G - 108
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	E - 109
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	G - 110
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	F - 111
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	N - 112
1p9s_A_100	1p9s	A	MSESELENOMETHIONINE	A - 115

Clusters included in this Subclass

CLUSTER: AR.6.5

CLUSTER: AR.8.4