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Information on SUBCLASS 8.2.1
Subclass Accession number: 4188
Subclass: 8.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 65

Average sequence ID (%) : 45.8 +/- 28.2
Average RMSD (Å) : 0.389 +/- 0.196

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: phpphpXpDXhX
(φψ)-conformation: bbabpbaaapeb
Pattern: [fily][kqrsty][fiklmv][adegknrst][aeknqrst][aflmtv][cdehknqrst]x[adegknqrs][dhnq]x[ags]x[fwy][filtvwy][c]x
Conservation:0.120-0.544-0.103-0.597-0.282-0.178-0.405-0.817-0.1790.423-0.6680.343-0.7091.743-0.4533.050-0.745
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bd2_E_771bd2   E7793LRLLSAAPSQTSVYFCAEEESS--GGG-EEEEEExxbabpbaaaxbbbbbb
1bm3_L_701bm3   L7389LSINSVETEDFGMYFCQEEESS--GGG-EEEEEEbbbaxpbaaaxexbbbb
1bww_A_721bww   A7591FTISSLQPEDIATYYCQEEESS--GGG-EEEEEEbbbabxbaaaxbbbbbb
1bz7_A_701bz7   A7389LTISNLEEEDIATFFCQEEESS--GGG-SEEEEEbbbabxbaaaxbbbbbb
1c5c_L_701c5c   L7389LTISSLESEDFADYYCLEEESS--GGG-SEEEEEbbbabxbaaaxbbbbxb
1cdy_*_1431cdy   -144160LSVSQLELQDSGTWTCTEEESS--STT-EEEEEEbbbabxxaaaxexbbxb
1cfv_L_751cfv   L7894LKISRVAAEDLGLYFCSEEESS--GGG-EEEEEEbbbabpbaaaxebxbxb
1clo_L_701clo   L7389LTISRVEAEDAATYYCQEEESS--GGG-EEEEEEbbbabpbaaapebbbbb
1cs6_A_1661cs6   A166182LYIAKTEASDLGNYSCFEEESS--GGG-EEEEEExbbabxbaaapebbbxb
1d5i_L_701d5i   L7389LTISSLEYEDMGIYYCLEEESS--GGG-EEEEEEbbbabxbaaaxebbbbb
1dqd_L_691dqd   L7288LTISRMEAEDAATYYCQEEESS--GGG-EEEEEEbbbabpbaaapebbbxb
1e4w_L_701e4w   L7389LTISNLEEEDIAFYFCQEEESS--GGG-SEEEEEbbbabpbaaaxbbbbxb
1e6o_L_691e6o   L7288LTISSMEAEDAAIYYCQEEESS--GGG-EEEEEEbbbabpbaaaxebbbbb
1eeq_A_701eeq   A7389LTISSLQAEDVAVYYCQEEESS--GGG-EEEEEEbbbabxbaaaxebbbbb
1f2q_A_1351f2q   A136152ISITNATVEDSGTYYCTEEESS--GGG-EEEEEEbbbabpbaaaxebbbbb
1f97_A_921f97   A93109ITFSSVTRKDNGEYTCMEEES---GGG-EEEEEEbbxabbbaaapebbbxb
1fe8_L_701fe8   L7389LTISNLESEDIATYFCQEEESS--GGG-SEEEEEbbbabpbaaaxbbbbxb
1fgn_L_701fgn   L7389LTISSLESDDTATYYCLEEESS--GGG-EEEEEEbbbabpbaaaxebbbbb
1fgv_L_701fgv   L7389LTISSLQPEDFATYYCQEEESS--GGG-SEEEEEbbbabpbaaaxbbbbbb
1fhg_A_971fhg   A100116LTISEVCGDDDAKYTCKEEESS--GGG-EEEEEEbbbabpbaaaxbbbbbb
1fnl_A_551fnl   A5672YFIDAATVNDSGEYRCQEEESS--GGG-EEEEEEbxbabpbaaaxexbbbb
1fns_L_701fns   L7389LTISNLEPEDIATYYCQEEESS--GGG-SEEEEEbbbabxbaaaxbbbbxb
1gpo_L_751gpo   L7894LSINSVETEDLAVYFCQEEESS--GGG-SEEEEEbbbabpbaaaxbbbbbb
1h8n_A_731h8n   A7692LTISNVQSEDLADYFCQEEESS--GGG-SEEEEEbbbabpbaaaxbxbbbb
1hyx_L_701hyx   L7389LKISRVEAEDLGVYYCFEEESS--GGG-SEEEEEbbbabxxaaaxebxbbb
1i9e_A_751i9e   A7591LRKASVHWSDSAVYFCAEEESS--GGG-EEEEEExbbabxbaaaxebbbxb
1igj_A_701igj   A7389LKISRVEAEDLGIYFCSEEESS--GGG-SEEEEEbbbabxxaaaxebbbxb
1il1_B_761il1   B7995LTISSVKAEDLAVYYCQEEESS--GGG-EEEEEEbbbabxbaaapebbbbb
1ind_H_781ind   H8197LQLNSLRSEDTALYFCAEEE-S--GGG-EEEEEEbxbabxbaaaxbxbbbb
1iqd_A_631iqd   A7490LTISRLEPEDFAVYYCQEEESS--GGG-SEEEEEbbbabxbaaaxbbbbbb
1j8h_D_751j8h   D7591LTKPSAHMSDAAEYFCAEEESS--GGG-EEEEEExbbabxbaaaxbbbbbb
1j8h_E_761j8h   E7793LILESASTNQTSMYLCAEEESS--GGG-EEEEEEbbbabpbaaaxbbxbbb
1jfq_L_701jfq   L7389LTISNLEQEDIATYFCQEEESS--GGG-SEEEEEbbxabpbaaaxbbbbxb
1k6q_L_701k6q   L7389LTISSLESDDTATYYCLEEE-S--GGG-EEEEEEbbbaxpbaaaxebbbbb
1kcu_L_701kcu   L7389LTISSVQAEDLADYHCGEEESS--GGG-SEEEEEbbbabxbaaaxbxbbbb
1kcv_L_701kcv   L7389LTISSVQADDDADYYCGEEESS--GGG-EEEEEEbbbabxbaaaxexbbbb
1kgc_D_721kgc   D7591LILHRATLRDAAVYYCIEEESS--GGG-EEEEEExbxabxbaaaxbxbbxb
1l7i_L_701l7i   L7389LTISSLQPEDFATYYCQEEESS--GGG-EEEEEEbbbabpbaaaxbbbbbb
1lo0_L_751lo0   L7894LKISRVETEDLGIYYCFEEESS--GGG-EEEEEEbbbabpbaaaxebbbbb
1lp9_E_751lp9   E7591LQKSSAQLSDSALYYCAEEESS--GGG-EEEEEExbbabxbaaapbxbbbb
1lp9_F_741lp9   F7793LILELASLSQTAVYFCAEEESS--GGG-EEEEEEbbbabpbaaaxbbbbbb
1mam_L_701mam   L7389LTISNLNQEDMATYICQEEESS--GGG-EEEEEEbbbabxbaaaxbbbbbb
1mju_L_701mju   L7389LRISRVEAEDVGVYYCLEEESS--GGG-EEEEEExbbabxbaaaxebbbxb
1mvu_A_761mvu   A7995LTISSVQAEDLAVYYCQEEESS--GGG-SEEEEEbbbabpbaaaxebbbbb
1n0x_L_701n0x   L7389LTITRVEPEDFALYYCQEEESS--GGG-EEEEEEbbbabxbaaaxbbbbbb
1ncw_L_701ncw   L7389LKISRVEAEDLGVYYCWEEESS--GGG-EEEEEEbbbabxbaaaxebxbbb
1nez_G_841nez   G87103LTLNKFSKENEGYYFCSEEESS--GGG-EEEEEEbbxabpbaaaxebxbbb
1nkr_*_591nkr   -6480FSISRMTQDLAGTYRCYEEESS--GGG-EEEEEEbxbabxbaaaxexbbbb
1olz_A_5881olz   A588604LLIFNLSEGDSGVYQCLEEE-S--GGG-EEEEEExbbaxxbaaaxebbbbb
1osp_L_711osp   L7389LSITSLQTEDVATYFCQEEESS--GGG-SEEEEEbbbabxbaaaxbbbbbb
1qz1_A_2531qz1   A254270LTIRNVDKNDEAEYVCIEEE-S--GGG-EEEEEEbbxabpbaaaxexbbbb
1rhf_A_571rhf   A6278LSLKSVERSDAGRYWCQEEESS--GGG-EEEEEEbbbabxbaaaxexbbbb
1rhh_A_701rhh   A7389LTIGRLEPEDLAVYYCQEEESS--GGG-EEEEEEbbbabpbaaapebbbbb
1rz7_L_701rz7   L7389LTINSLQPEDFATYYCQEEESS--GGG-SEEEEEbbbabpbaaaxbbbbbb
1rz8_A_701rz8   A7389LTISSLQSEDFAVYYCQEEETT--GGG-EEEEEEbbbabpbaaaxebbbbb
1rzg_B_701rzg   B7389LTISSLQSDDFATYYCQEEESS--GGG-EEEEEEbbbabpbaaaxbbbbbb
1sbs_L_761sbs   L7995LTISSVEAEDLAVYYCQEEESS--GGG-EEEEEEbbbabxbaaapexbbbb
1yei_L_701yei   L7389LKISRVEAADLGVYYCVEEESS--GGG-EEEEEEbbbabxbaaaxebbbbb
2fbj_H_782fbj   H8197LQMSKVRSEDTALYYCAEEE-S--GGG-EEEEEEbbbabpbaaapbxbbbb
2fbj_L_692fbj   L7288LTINTMEAEDAAIYYCQEEESS--GGG-EEEEEEbbbabxbaaaxbbbbxb
2fcb_A_1402fcb   A141157FSIPQANHSHSGDYHCTEEETT--GGG-EEEEEEbbbabpbaaaxexbbbb
2fcb_A_582fcb   A5874SYRFKANNNDSGEYTCQEEEEE--GGG-EEEEEEbbbbxxbaaaxexbbbb
2h1p_L_752h1p   L7894LKISRVEAEDQGVYFCSEEESS--GGG-SEEEEEbbbabxxaaaxebbbbb
2imn_*_702imn   -7389LTISSVQAEDLAVYYCQEEESS--GGG-EEEEEEbbbabxbaaapbbbbbb
43c9_A_7043c9   A7389LTISSVQAEDQADYFCQEEESS--GGG-EEEEEEbbbabxbaaapbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c5c_L_701c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID L - 89
1c5c_L_701c5c   L     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID Q - 90
1d5i_L_701d5i   L     CDCADMIUM ION E - 79
1d5i_L_701d5i   L     CD1CADMIUM ION, 1 WATER COORDINATED E - 79
1d5i_L_701d5i   L     CDCADMIUM ION E - 81
1d5i_L_701d5i   L     CD1CADMIUM ION, 1 WATER COORDINATED E - 81
1f2q_A_1351f2q   A     NAGN-ACETYL-D-GLUCOSAMINE T - 148
1fe8_L_701fe8   L     MSESELENOMETHIONINE N - 77
1fe8_L_701fe8   L     MSESELENOMETHIONINE L - 78
1fe8_L_701fe8   L     MSESELENOMETHIONINE E - 79
1fe8_L_701fe8   L     MSESELENOMETHIONINE S - 80
1fnl_A_551fnl   A     HGMERCURY (II) ION N - 64
1fnl_A_551fnl   A     HGMERCURY (II) ION D - 65
1fnl_A_551fnl   A     HGMERCURY (II) ION Y - 69
1hyx_L_701hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER F - 89
1hyx_L_701hyx   L     CPD[1-(3-DIMETHYLAMINO-PROPYL)-3-ETHYL-UREIDO]-[4-(2,2,2-TRIFLUORO-ACETYLAMINO)-BENZYL]PHOSPHINIC ACID-2-(2,2-DIHYDRO-ACETYLAMINO)-3-HYDROXY-1-(4-NITROPHENYL)-PROPYL ESTER Q - 90
1i9e_A_751i9e   A     NAGN-ACETYL-D-GLUCOSAMINE R - 76
1igj_A_701igj   A     DGXDIGOXIN S - 89
1igj_A_701igj   A     DGXDIGOXIN Q - 90
1mju_L_701mju   L     GOLGLYCEROL E - 81
1mju_L_701mju   L     GOLGLYCEROL D - 82
1mju_L_701mju   L     GOLGLYCEROL V - 83
1mju_L_701mju   L     GOLGLYCEROL Y - 86
1ncw_L_701ncw   L     BEZBENZOIC ACID W - 89
1ncw_L_701ncw   L     BEZBENZOIC ACID Q - 90
1nez_G_841nez   G     NAGN-ACETYL-D-GLUCOSAMINE E - 95
1rhf_A_571rhf   A     MSESELENOMETHIONINE H - 57
1rhf_A_571rhf   A     MSESELENOMETHIONINE W - 58
1rhf_A_571rhf   A     ACTACETATE ION R - 74
1rhf_A_571rhf   A     ACTACETATE ION W - 76
1rhf_A_571rhf   A     MSESELENOMETHIONINE V - 79
1rz7_L_701rz7   L     GOLGLYCEROL Q - 79
1rz7_L_701rz7   L     GOLGLYCEROL F - 83
1yei_L_701yei   L     PGGPARA-NITROPHENYLPHOSPHONOBUTANOYL-GLYCINE V - 89
1yei_L_701yei   L     PGGPARA-NITROPHENYLPHOSPHONOBUTANOYL-GLYCINE Q - 90
2fbj_L_692fbj   L     ZNZINC ION W - 90
2fbj_H_782fbj   H     ZNZINC ION H - 100

Clusters included in this Subclass
CLUSTER: AR.7.14
CLUSTER: AR.7.8
CLUSTER: AR.8.4