ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.3.9

Subclass Accession number: 2722
Subclass: 1.3.9

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 10

Average sequence ID (%) : 31.1 +/- 26.8
Average RMSD (Å) : 0.420 +/- 0.199

Consensus geometry

d (Å): 7

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXXXh
(φψ)-conformation:	bbeaa

Pattern:	[iltvwy]	[LMV]	[ILV]	[ACGS]	[AFGPT]	[GS]	[iltv]	[AGS]	[giltv]	[AGMT]	[ep]	[fmvy]	[almy]	[agqrs]	[FILMY]
Conservation:	-0.875	1.242	1.326	-0.125	-1.257	1.514	-0.192	1.419	-1.214	-0.706	0.741	-0.407	-0.751	-0.852	0.137

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8p_*_109	1a8p	-	111	125	YMLSTGTGLAPFMSL	EEEEEGGGGHHHHHH	xbxbbeaaaaaaaaa
1brt_*_92	1brt	-	93	107	VLVGFSTGTGEVARY	EEEEEGGGHHHHHHH	bxbbbeaaaaaaaaa
1fdr_*_108	1fdr	-	110	124	WMLATGTAIGPYLSI	EEEEEGGGGHHHHHH	xbbbbeaaaaaaaaa
1fnc_*_164	1fnc	-	166	180	IMLGTGTGIAPFRSF	EEEEEGGGGHHHHHH	bbbbbeaaaaaaaaa
1gvh_A_262	1gvh	A	263	277	TLISAGVGQTPMLAM	EEEEEGGGGHHHHHH	bbbbbeaaaaaaaaa
1imj_A_106	1imj	A	106	120	VVISPSLSGMYSLPF	EEEEEGGGHHHHHHH	xbxbxeaaaaaaaaa
1jb9_A_167	1jb9	A	169	183	IMIATGTGVAPFRGY	EEEEEGGGGHHHHHH	bbbbbeaaaaaaaaa
1krh_A_213	1krh	A	214	228	LMLAGGTGIAPFLSM	EEEEEGGGHHHHHHH	bbbbbeaaaaaaaaa
2cnd_*_138	2cnd	-	140	154	AMICGGSGITPMYQI	EEEEEGGGHHHHHHH	bbbbbeaaaaaaaaa
2pia_*_113	2pia	-	115	129	ILVAGGIGITPMLSM	EEEEEGGGHHHHHHH	bbbbbeaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a8p_*_109	1a8p	*	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 117
1a8p_*_109	1a8p	*	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 120
1a8p_*_109	1a8p	*	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 121
1fdr_*_108	1fdr	*	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 116
1fdr_*_108	1fdr	*	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 117
1fnc_*_164	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	T - 170
1fnc_*_164	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	G - 171
1fnc_*_164	1fnc	*	FDADIHYDROFLAVINE-ADENINE DINUCLEOTIDE	T - 172
1fnc_*_164	1fnc	*	A2PADENOSINE-2'-5'-DIPHOSPHATE	T - 172
1fnc_*_164	1fnc	*	FDADIHYDROFLAVINE-ADENINE DINUCLEOTIDE	G - 173
1fnc_*_164	1fnc	*	FDADIHYDROFLAVINE-ADENINE DINUCLEOTIDE	A - 175
1gvh_A_262	1gvh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 269
1gvh_A_262	1gvh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 272
1gvh_A_262	1gvh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 273
1jb9_A_167	1jb9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 175
1jb9_A_167	1jb9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 176
1jb9_A_167	1jb9	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 178
1krh_A_213	1krh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 220
1krh_A_213	1krh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 221
1krh_A_213	1krh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 223
1krh_A_213	1krh	A	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 224
2cnd_*_138	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 146
2cnd_*_138	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 147
2cnd_*_138	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 149
2cnd_*_138	2cnd	*	FADFLAVIN-ADENINE DINUCLEOTIDE	P - 150
2pia_*_113	2pia	*	FMNFLAVIN MONONUCLEOTIDE	I - 121
2pia_*_113	2pia	*	FMNFLAVIN MONONUCLEOTIDE	T - 124
2pia_*_113	2pia	*	FMNFLAVIN MONONUCLEOTIDE	P - 125

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1brt_*_92	1brt	*	NULCATALYTIC TRIAD.	S - 98
1gvh_A_262	1gvh	A	AC4NA BINDING SITE FOR CHAIN A	Q - 271
1gvh_A_262	1gvh	A	AC1FAD BINDING SITE FOR CHAIN A	T - 272

Clusters included in this Subclass