ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 10.1.1

Subclass Accession number: 3550
Subclass: 10.1.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 7

Average sequence ID (%) : 39.4 +/- 24.6
Average RMSD (Å) : 0.514 +/- 0.146

Consensus geometry

d (Å): 13

delta (°): 45-90

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XpPpNPTGXhhpXp
(φψ)-conformation:	bbwpbwalpbppaa

Pattern:	[CTV]	[KR]	[AILV]	[LMV]	[ILVY]	[FILV]	[CNT]	[NST]	[P]	[CNQS]	[N]	[P]	[CT]	[G]	x	[nv]	[FILWY]	[NPRST]	[kpr]	[DEKQ]	x	[FLV]	[ER]	[adegt]	[ILM]	[ALV]	[DEQR]	[FLV]	[ACTV]
Conservation:	-0.226	0.850	-0.519	0.023	-0.277	-0.151	-0.448	0.023	2.447	-0.644	1.927	2.447	0.391	1.927	-1.019	-0.671	-0.342	-0.769	-0.910	-0.207	-1.050	-0.293	0.171	-1.300	0.160	-0.448	-0.408	-0.139	-0.545

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b5p_A_165	1b5p	A	165	193	TKALVVNSPNNPTGAVYPKEVLEALARLA	EEEEEEESS-TTT-----HHHHHHHHHHH	xabbxbbbwxbwavxbxxaaaaaaaaaaa
1bw0_A_178	1bw0	A	178	206	TKLLIVTNPSNPCGSNFSRKHVEDIVRLA	EEEEEEESS-TTT-----HHHHHHHHHHH	xabbbbbbwbbwavxbpxaaaaaaaaaaa
1d2f_A_163	1d2f	A	163	191	CKIMLLCSPQNPTGKVWTCDELEIMADLC	EEEEEEESS-TTT-----TTHHHHHHHHH	xabbxbxbwxbwavpbxxaaaaaaaaaaa
1fg7_A_147	1fg7	A	147	175	VKVVYVCSPNNPTGQLINPQDFRTLLELT	EEEEEEESS-TTT-----HHHHHHHHHHH	xabbbbxbwxbwavxxxpaaaaaaaaaaa
1gde_A_161	1gde	A	161	189	TRALIINSPCNPTGAVLTKKDLEEIADFV	EEEEEEESS-TTT-----HHHHHHHHHHH	xabbbbbbwxbwavxbxxaaaaaaaaaaa
1j32_A_164	1j32	A	164	192	TKLLVFNTPSNPTGMVYTPDEVRAIAQVA	EEEEEEESS-TTT-----HHHHHHHHHHH	xabbxbbbwxbwavxbxxaaaaaaaaaaa
1o4s_A_163	1o4s	A	163	191	TKAVLINSPNNPTGVVYRREFLEGLVRLA	EEEEEEESS-TTT-----HHHHHHHHHHH	xabbbbbbwxbwavxbxxaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1b5p_A_165	1b5p	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 171
1b5p_A_165	1b5p	A	PLPPYRIDOXAL-5'-PHOSPHATE	P - 173
1b5p_A_165	1b5p	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 174
1b5p_A_165	1b5p	A	PO4PHOSPHATE ION	N - 175
1b5p_A_165	1b5p	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 175
1bw0_A_178	1bw0	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	T - 184
1bw0_A_178	1bw0	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	P - 186
1bw0_A_178	1bw0	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	S - 187
1bw0_A_178	1bw0	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	N - 188
1d2f_A_163	1d2f	A	PLPPYRIDOXAL-5'-PHOSPHATE	C - 169
1d2f_A_163	1d2f	A	PLPPYRIDOXAL-5'-PHOSPHATE	P - 171
1d2f_A_163	1d2f	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 173
1fg7_A_147	1fg7	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	C - 153
1fg7_A_147	1fg7	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	P - 155
1fg7_A_147	1fg7	A	PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE	N - 157
1gde_A_161	1gde	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 167
1gde_A_161	1gde	A	PLPPYRIDOXAL-5'-PHOSPHATE	P - 169
1gde_A_161	1gde	A	PLPPYRIDOXAL-5'-PHOSPHATE	C - 170
1gde_A_161	1gde	A	GLUGLUTAMIC ACID	N - 171
1j32_A_164	1j32	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 170
1j32_A_164	1j32	A	PLPPYRIDOXAL-5'-PHOSPHATE	P - 172
1j32_A_164	1j32	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 173
1o4s_A_163	1o4s	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 169
1o4s_A_163	1o4s	A	PLPPYRIDOXAL-5'-PHOSPHATE	N - 172

Clusters included in this Subclass