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Information on SUBCLASS 2.8.1
Subclass Accession number: 2859
Subclass: 2.8.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 9

Average sequence ID (%) : 27.1 +/- 23.2
Average RMSD (Å) : 0.389 +/- 0.105

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: hhhpcX
(φψ)-conformation: bbpwaa
Pattern: [gtv][AILMV][ILMV][ACGPST][ILV][al][KRT][AGK][AGS][filvy][fglmpv][FLMPY][afgmy][adnst]x[AIL][ACILT]
Conservation:-0.7160.5471.434-0.6221.6200.2240.4851.1490.855-0.484-1.539-0.085-1.054-0.862-1.4900.960-0.423
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bzy_A_611bzy   A6278VALCVLKGGYKFFADLLEEEEEETTTHHHHHHHHbxbxxxwaaaaaaaaaa
1dqn_A_631dqn   A6480TLVALLTGAYLYASLLTEEEEETTTHHHHHHHHHxxbbxxwaaaaaaaaaa
1fsg_A_721fsg   A7389HIICILKGSRGFFNLLIEEEEEETTTHHHHHHHHbbbxxxwaaaaaaaaaa
1hgx_A_411hgx   A4157VMICVLTGAVFFYTDLLEEEEETTTTHHHHHHHHxxxbxxwaaaaaaaaaa
1j7j_A_361j7j   A3753VLVGLLRGSFMFMADLCEEEEETTTTHHHHHHHHbxbbbxwaaaaaaaaaa
1nul_A_311nul   A3147GIIAVSRGGLVPGALLAEEEEEETTTHHHHHHHHbbbxxxwaaaaaaaaaa
1o57_A_1331o57   A133149VVMTVATKGIPLAYAAAEEEEETTTTHHHHHHHHbbbbbpwaaaaaaaaaa
1o5o_A_721o5o   A7389VVVPILRAGLVMADGILEEEEEETTHHHHHHHHHbbbxxxwaaaaaaaaaa
1tc1_A_451tc1   A4662VLISVLKGSFMFTADLCEEEEETTTTHHHHHHHHxxxxxxwaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bzy_A_611bzy   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER V - 66
1bzy_A_611bzy   A     POPPYROPHOSPHATE 2- V - 66
1bzy_A_611bzy   A     MGMAGNESIUM ION V - 66
1bzy_A_611bzy   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER L - 67
1bzy_A_611bzy   A     POPPYROPHOSPHATE 2- L - 67
1bzy_A_611bzy   A     MGMAGNESIUM ION L - 67
1bzy_A_611bzy   A     POPPYROPHOSPHATE 2- K - 68
1bzy_A_611bzy   A     MGMAGNESIUM ION K - 68
1bzy_A_611bzy   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER G - 69
1bzy_A_611bzy   A     POPPYROPHOSPHATE 2- G - 69
1bzy_A_611bzy   A     MGMAGNESIUM ION G - 69
1bzy_A_611bzy   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER G - 70
1bzy_A_611bzy   A     POPPYROPHOSPHATE 2- G - 70
1bzy_A_611bzy   A     MGMAGNESIUM ION G - 70
1dqn_A_631dqn   A     MGMAGNESIUM ION L - 68
1dqn_A_631dqn   A     POPPYROPHOSPHATE 2- L - 68
1dqn_A_631dqn   A     POPPYROPHOSPHATE 2- L - 69
1dqn_A_631dqn   A     POPPYROPHOSPHATE 2- T - 70
1dqn_A_631dqn   A     MGMAGNESIUM ION G - 71
1dqn_A_631dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER G - 71
1dqn_A_631dqn   A     POPPYROPHOSPHATE 2- G - 71
1dqn_A_631dqn   A     MGMAGNESIUM ION A - 72
1dqn_A_631dqn   A     POPPYROPHOSPHATE 2- A - 72
1fsg_A_721fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED I - 77
1fsg_A_721fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID I - 77
1fsg_A_721fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED L - 78
1fsg_A_721fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID L - 78
1fsg_A_721fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED K - 79
1fsg_A_721fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID K - 79
1fsg_A_721fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED G - 80
1fsg_A_721fsg   A     MO3MAGNESIUM ION, 3 WATERS COORDINATED G - 80
1fsg_A_721fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID G - 80
1fsg_A_721fsg   A     MO2MAGNESIUM ION, 2 WATERS COORDINATED S - 81
1fsg_A_721fsg   A     PRPALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID S - 81
1j7j_A_361j7j   A     MGMAGNESIUM ION L - 41
1j7j_A_361j7j   A     MGMAGNESIUM ION L - 42
1j7j_A_361j7j   A     MGMAGNESIUM ION G - 44
1j7j_A_361j7j   A     MGMAGNESIUM ION S - 45
1nul_A_311nul   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED V - 35
1nul_A_311nul   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED S - 36
1nul_A_311nul   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED R - 37
1nul_A_311nul   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 38
1nul_A_311nul   A     MO5MAGNESIUM ION, 5 WATERS COORDINATED G - 39
1o57_A_1331o57   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID V - 137
1o57_A_1331o57   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID A - 138
1o57_A_1331o57   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID T - 139
1o57_A_1331o57   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID K - 140
1o57_A_1331o57   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID G - 141
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL I - 142
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL P - 143
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL L - 144
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL Y - 146
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL A - 147
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL S - 150
1o57_A_1331o57   A     2PENONAETHYLENE GLYCOL Y - 151
1o57_A_1331o57   A     PG4TETRAETHYLENE GLYCOL Y - 151
1o57_A_1331o57   A     P6GHEXAETHYLENE GLYCOL L - 152
1o5o_A_721o5o   A     U5PURIDINE-5'-MONOPHOSPHATE L - 78
1o5o_A_721o5o   A     U5PURIDINE-5'-MONOPHOSPHATE A - 80
1tc1_A_451tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID V - 50
1tc1_A_451tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID L - 51
1tc1_A_451tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 52
1tc1_A_451tc1   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID G - 53

Clusters included in this Subclass
CLUSTER: EH.3.159
CLUSTER: EH.3.222
CLUSTER: EH.4.178