ArchDB - Biological DataBase of Protein Loops

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Information on SUBCLASS 3.1.9

Subclass Accession number: 2881
Subclass: 3.1.9

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 13

Average sequence ID (%) : 11.1 +/- 17.2
Average RMSD (Å) : 0.838 +/- 0.250

Consensus geometry

d (Å): 15

delta (°): 0-45

theta (°): 90-135

rho (°): 225-270

Consensus Sequence:	XXXXXXp
(φψ)-conformation:	bbpppaa

Pattern:	x	x	x	x	x	x	x	x	[deqty]	x	[adekr]	[aeknqr]
Conservation:	-0.715	0.207	0.038	-1.697	-0.517	0.036	-1.389	0.267	2.020	0.387	0.420	0.943

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cf3_A_143	1cf3	A	145	156	RARAPNAKQIAA	EE----HHHHHH	bxbxxxaaaaaa
1gpe_A_148	1gpe	A	149	160	AARTPTAAQLAA	EE----HHHHHH	bxbxxxaaaaaa
1h4w_A_155	1h4w	A	159	170	DAPVLTQAECKA	EEB--HHHHHHH	xbxxxxaaaaaa
1kk8_A_410	1kk8	A	410	421	VTKGQNMNQVVN	EE----HHHHHH	bxbbxbaaaaaa
1kq6_A_37	1kq6	A	38	49	KVVYRRFTEIYE	EE----HHHHHH	bxbbbxaaaaaa
1l2l_A_35	1l2l	A	38	49	AIKYLKREDLEK	EE-B--HHHHHH	bxbxpbaaaaaa
1lam_*_397	1lam	-	398	409	WRMPLFEHYTRQ	EE----HHHHHH	bxbwbbaaaaaa
1o7k_A_37	1o7k	A	38	49	KVVYRRFTEIYE	EE---BHHHHHH	bxbbbxaaaaaa
1p2f_A_142	1p2f	A	142	153	KRIHLPKKEFEI	EE----HHHHHH	bxbbbxaaaaaa
1p35_A_53	1p35	A	55	66	SVTRKNNNLRDR	EE----TTHHHH	bxbbbxaaaaaa
1p99_A_277	1p99	A	277	288	KPVNLSKDEIKA	EE----HHHHHH	bxbbxxaaaaaa
1s7j_A_121	1s7j	A	121	132	ERIPILPEYEAA	EE----HHHHHH	xpbxxxaaaaaa
1uok_*_292	1uok	-	295	306	DVKPCSLLTLKE	EE----HHHHHH	xxbxbxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kq6_A_37	1kq6	A	GOLGLYCEROL	E - 37
1kq6_A_37	1kq6	A	GOLGLYCEROL	K - 38
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	V - 39
1kq6_A_37	1kq6	A	GOLGLYCEROL	V - 39
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	V - 40
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	Y - 41
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	R - 42
1kq6_A_37	1kq6	A	SULSULFATE ANION	R - 43
1kq6_A_37	1kq6	A	SULSULFATE ANION	F - 44
1kq6_A_37	1kq6	A	SULSULFATE ANION	T - 45
1kq6_A_37	1kq6	A	SULSULFATE ANION	E - 46
1kq6_A_37	1kq6	A	SULSULFATE ANION	Y - 48
1kq6_A_37	1kq6	A	SULSULFATE ANION	H - 51
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	K - 52
1kq6_A_37	1kq6	A	SULSULFATE ANION	K - 52
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	T - 53
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	L - 54
1kq6_A_37	1kq6	A	MSESELENOMETHIONINE	K - 55
1kq6_A_37	1kq6	A	SULSULFATE ANION	K - 55
1p2f_A_142	1p2f	A	MSESELENOMETHIONINE	L - 157
1p35_A_53	1p35	A	PO4PHOSPHATE ION	K - 59
1p35_A_53	1p35	A	PO4PHOSPHATE ION	N - 60
1p35_A_53	1p35	A	EDO1,2-ETHANEDIOL	L - 63
1p35_A_53	1p35	A	PO4PHOSPHATE ION	L - 63
1p35_A_53	1p35	A	EDO1,2-ETHANEDIOL	R - 66
1p35_A_53	1p35	A	PO4PHOSPHATE ION	R - 66
1p35_A_53	1p35	A	EDO1,2-ETHANEDIOL	I - 67
1p35_A_53	1p35	A	EDO1,2-ETHANEDIOL	K - 70
1p35_A_53	1p35	A	PO4PHOSPHATE ION	K - 70

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1o7k_A_37	1o7k	A	APIPTDINS(3,4)P2 SITE CONFIRMED BY MUTAGENESIS, CHAIN A	R - 43
1o7k_A_37	1o7k	A	APASECOND ANIONIC LIPID BINDING SITE.CHAIN A	H - 51
1o7k_A_37	1o7k	A	APASECOND ANIONIC LIPID BINDING SITE.CHAIN A	K - 55

Clusters included in this Subclass

CLUSTER: EH.3.160

CLUSTER: EH.5.50