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Information on SUBCLASS 3.8.3
Subclass Accession number: 2953
Subclass: 3.8.3 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 8

Average sequence ID (%) : 14.6 +/- 19.2
Average RMSD (Å) : 0.725 +/- 0.104

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XhXppXX
(φψ)-conformation: bbppbaa
Pattern: xxx[AILV]x[DEHN][DNST][ekp]x[aegs]x
Conservation:-0.223-0.962-0.6661.205-0.5191.8521.1770.403-1.040-0.461-0.767
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxy_A_341bxy   A3444ERVLEDTPAIREEEEE--HHHHbbbbxxbaaaa
1g8l_A_2191g8l   A223233LGIIRDDPHALEEEE-S-HHHHaexxxxbaaaa
1j5v_A_491j5v   A5262VTKLPNNPLGDEEEE-SSHHHHbbbbxxbaaaa
1o97_D_901o97   D90100VVLLPHSVDSLEEEEE-SHHHHbbbbxxbaaaa
1qdq_A_1471qdq   A150160SYSVANNEKEIEEEE-S-HHHHbbbbpxbaaaa
1the_A_1471the   A150160SYSVSDSEKEIEEEE-S-HHHHbbxbxxbaaaa
1uz5_A_2221uz5   A226236MGVARDDKESLEEEE-SSHHHHaebbxxbaaaa
1v1a_A_501v1a   A5363VGRVGEDELGAEEEE-SSHHHHbbbbpxbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1g8l_A_2191g8l   A     GOLGLYCEROL E - 219
1g8l_A_2191g8l   A     GOLGLYCEROL D - 228
1g8l_A_2191g8l   A     GOLGLYCEROL D - 229
1g8l_A_2191g8l   A     GOLGLYCEROL P - 230
1g8l_A_2191g8l   A     GOLGLYCEROL H - 231
1j5v_A_491j5v   A     MSESELENOMETHIONINE A - 49
1j5v_A_491j5v   A     2OFFERROUS ION, 2 WATERS COORDINATED Y - 50
1j5v_A_491j5v   A     NINICKEL (II) ION A - 63
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED A - 63
1j5v_A_491j5v   A     MSESELENOMETHIONINE A - 64
1j5v_A_491j5v   A     NINICKEL (II) ION G - 66
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED G - 66
1j5v_A_491j5v   A     NINICKEL (II) ION H - 67
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED H - 67
1j5v_A_491j5v   A     NINICKEL (II) ION L - 68
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED L - 68
1j5v_A_491j5v   A     NINICKEL (II) ION K - 70
1j5v_A_491j5v   A     NI3NICKEL (II) ION, 3 WATERS COORDINATED K - 70
1o97_D_901o97   D     FADFLAVIN-ADENINE DINUCLEOTIDE V - 97
1o97_D_901o97   D     FADFLAVIN-ADENINE DINUCLEOTIDE L - 100
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1uz5_A_2221uz5   A AC3SO4 BINDING SITE FOR CHAIN AG - 223
1uz5_A_2221uz5   A AC3SO4 BINDING SITE FOR CHAIN AF - 225
1uz5_A_2221uz5   A AC5SO4 BINDING SITE FOR CHAIN AD - 231

Clusters included in this Subclass
CLUSTER: EH.2.206
CLUSTER: EH.3.150
CLUSTER: EH.4.175