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Information on SUBCLASS 4.2.2
Subclass Accession number: 1244
Subclass: 4.2.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 19

Average sequence ID (%) : 10.3 +/- 13.3
Average RMSD (Å) : 0.716 +/- 0.161

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXXpXXXp
(φψ)-conformation: bbaappaa
Pattern: [acilvwy][acfgilmtv][adgnpqst][adegpqs][degknqst]x[dehpqst]x[adeknst]xx
Conservation:-0.255-0.678-0.5700.8450.9960.438-0.498-0.5222.175-1.227-0.704
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bg2_*_501bg2   -5161VFQSSTSQEQVEE-TT--HHHHbxxaaxxaaaa
1d0n_A_6801d0n   A683693WVGKDSQDEEKEE-TTS-HHHHxbxaaxxaaaa
1eg5_A_911eg5   A93103ITTPIEHKAVLEE-TTS-HHHHbbbaaxxaaaa
1ewk_A_2541ewk   A260270KIYSNAGEKSFEE-TT--HHHHbbxaaxxaaaa
1geq_A_1351geq   A139149LAAPNTPDERLEE-TT--HHHHbbbaaxxaaaa
1h16_A_3701h16   A374384LWSEKLPLNFKEE-TTS-HHHHxxbaaxxaaaa
1k75_A_2381k75   A242252IADSGATPDFVEE-TTS-HHHHbbxaaxbaaaa
1kzy_C_19191kzy   C19211931VTDPSCPASVLEE-TT--HHHHbbbaaxxaaaa
1l6r_A_1871l6r   A189199ACPANATDNIKEE-TTS-HHHHbbxaaxxaaaa
1ll2_A_341ll2   A3848LTTPQVSDTMREE-TTS-HHHHxbbaaxxaaaa
1m2t_A_21m2t   A717RTDQQTTGAEYEESTT--HHHHxbbaapxaaaa
1oyw_A_2631oyw   A265275AYHAGLENNVREE-TTS-HHHHxbbaaxxaaaa
1oyw_A_921oyw   A94104CLNSTQTREQQEE-TTS-HHHHbbbaaxxaaaa
1qop_A_1531qop   A153163ICPPNADDDLLEE-TT--HHHHxbxaNpxaaaa
1rkd_*_1371rkd   -139149LMQLESPLESVEE-SSS-HHHHbbbaabpaaaa
1rkq_A_2341rkq   A236246VAVDNAIPSVKEE-TTS-HHHHbbxaaxxaaaa
1tig_*_851tig   -8999RLSPTIEEHDFEE-TT--HHHHxbxaaxxaaaa
1ujp_A_1501ujp   A150160LLAPTSTDARIEE-TT--HHHHbbbaapxaaaa
2nap_A_1042nap   A107117YGSGQCLTEESEE-TTS-HHHHbbbaaxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bg2_*_501bg2   *     ADPADENOSINE-5'-DIPHOSPHATE S - 54
1bg2_*_501bg2   *     ADPADENOSINE-5'-DIPHOSPHATE T - 56
1bg2_*_501bg2   *     ADPADENOSINE-5'-DIPHOSPHATE Q - 58
1eg5_A_911eg5   A     MSESELENOMETHIONINE I - 92
1eg5_A_911eg5   A     MSESELENOMETHIONINE I - 93
1eg5_A_911eg5   A     MSESELENOMETHIONINE T - 94
1eg5_A_911eg5   A     MSESELENOMETHIONINE T - 95
1eg5_A_911eg5   A     MSESELENOMETHIONINE I - 97
1eg5_A_911eg5   A     MSESELENOMETHIONINE E - 98
1eg5_A_911eg5   A     MSESELENOMETHIONINE H - 99
1eg5_A_911eg5   A     PLPPYRIDOXAL-5'-PHOSPHATE H - 99
1eg5_A_911eg5   A     MSESELENOMETHIONINE A - 101
1eg5_A_911eg5   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 101
1eg5_A_911eg5   A     MSESELENOMETHIONINE V - 102
1eg5_A_911eg5   A     MSESELENOMETHIONINE L - 103
1eg5_A_911eg5   A     MSESELENOMETHIONINE E - 104
1ewk_A_2541ewk   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID Y - 262
1ewk_A_2541ewk   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 263
1ewk_A_2541ewk   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID N - 264
1h16_A_3701h16   A     PG4TETRAETHYLENE GLYCOL F - 386
1k75_A_2381k75   A     MSESELENOMETHIONINE A - 243
1k75_A_2381k75   A     MSESELENOMETHIONINE D - 244
1k75_A_2381k75   A     MSESELENOMETHIONINE S - 245
1k75_A_2381k75   A     MSESELENOMETHIONINE G - 246
1k75_A_2381k75   A     MSESELENOMETHIONINE A - 247
1k75_A_2381k75   A     MSESELENOMETHIONINE T - 248
1k75_A_2381k75   A     MSESELENOMETHIONINE P - 249
1k75_A_2381k75   A     MSESELENOMETHIONINE V - 252
1l6r_A_1871l6r   A     CACALCIUM ION P - 191
1l6r_A_1871l6r   A     CACALCIUM ION N - 193
1m2t_A_21m2t   A     GOLGLYCEROL F - 18
1oyw_A_921oyw   A     MSESELENOMETHIONINE C - 94
1oyw_A_921oyw   A     MSESELENOMETHIONINE L - 95
1oyw_A_921oyw   A     MSESELENOMETHIONINE N - 96
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 99
1oyw_A_921oyw   A     MSESELENOMETHIONINE R - 101
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 103
1oyw_A_921oyw   A     MSESELENOMETHIONINE Q - 104
1oyw_A_921oyw   A     MSESELENOMETHIONINE L - 105
1oyw_A_921oyw   A     MSESELENOMETHIONINE E - 106
1qop_A_1531qop   A     IPLINDOLE-3-PROPANOL PHOSPHATE I - 153
1rkd_*_1371rkd   *     RIBRIBOSE E - 143
2nap_A_1042nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE S - 109
2nap_A_1042nap   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE Q - 111
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1rkd_*_1371rkd   * RB1RESIDUES MAKING DIRECT HYDROGEN BONDS WITH RIBOSE.E - 143

Clusters included in this Subclass
CLUSTER: EH.4.258
CLUSTER: EH.4.55
CLUSTER: EH.6.5