ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.23.1

Subclass Accession number: 1303
Subclass: 4.23.1

PSSM

Type: EH beta-alpha
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Conserved Annotation
EC : 2.5 (>75 %)  2.5.1 (>75 %)
GO : GO:0016765 (>75 %)
SCOP : 55199 (>75 %)  55205 (>75 %)  55209 (>75 %)

Number of loops: 7

Average sequence ID (%) : 11.9 +/- 14.2
Average RMSD (Å) : 0.871 +/- 0.373

Consensus geometry

d (Å): 11

delta (°): 45-90

theta (°): 135-180

rho (°): 0-45

Consensus Sequence:	XhhXhpXp
(φψ)-conformation:	bbpgppaa

Pattern:	x	[FLTV]	x	[ILV]	x	[EGNR]	x	[DENRST]	[erstw]	[deqst]	[DHRTW]	x
Conservation:	-0.485	0.585	-0.916	2.469	-0.886	1.011	-1.089	0.298	-0.393	0.101	-0.334	-0.361

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b9h_A_292	1b9h	A	294	305	MFRIPGLTEERR	EEE-TT--HHHH	bbbbpgxxaaaa
1es9_A_67	1es9	A	69	80	NFGIGGDSTQHV	EEE-TT--HHHH	baxbxvxxaaaa
1hx0_A_12	1hx0	A	13	24	IVHLFEWRWVDI	EEEETT--HHHH	bbxxxvxxaaaa
1jnd_A_190	1jnd	A	193	204	LTVLPNVNSTWY	EEE-TT--HHHH	bbxxwUxxaaaa
1jo0_A_47	1jo0	A	49	60	KVKVAGADRETK	EEEETT--HHHH	bbxbxvbxaaaa
1vjg_A_43	1vjg	A	49	60	NLGIRRDTSSDI	EEE-TT--HHHH	xaxbpvxxavUa
1xo1_A_121	1xo1	A	121	132	TFTIRGVEADDM	EE--TTB-HHHH	bbbbpvbxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1hx0_A_12	1hx0	A	EGLETHYLENE GLYCOL	R - 20
1hx0_A_12	1hx0	A	EGLETHYLENE GLYCOL	W - 21
1hx0_A_12	1hx0	A	EGLETHYLENE GLYCOL	V - 22
1hx0_A_12	1hx0	A	EGLETHYLENE GLYCOL	E - 27
1hx0_A_12	1hx0	A	EGLETHYLENE GLYCOL	R - 30
1jnd_A_190	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 199
1jnd_A_190	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 200
1jnd_A_190	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 201
1jnd_A_190	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 202
1jnd_A_190	1jnd	A	NAGN-ACETYL-D-GLUCOSAMINE	W - 203
1jo0_A_47	1jo0	A	GOLGLYCEROL	L - 47
1jo0_A_47	1jo0	A	GOLGLYCEROL	K - 49
1jo0_A_47	1jo0	A	GOLGLYCEROL	K - 51
1jo0_A_47	1jo0	A	GOLGLYCEROL	Q - 61
1jo0_A_47	1jo0	A	GOLGLYCEROL	I - 64
1jo0_A_47	1jo0	A	GOLGLYCEROL	N - 65
1jo0_A_47	1jo0	A	GOLGLYCEROL	A - 66
1jo0_A_47	1jo0	A	GOLGLYCEROL	V - 68
1jo0_A_47	1jo0	A	GOLGLYCEROL	R - 69

Clusters included in this Subclass

CLUSTER: EH.4.144

CLUSTER: EH.5.131

CLUSTER: EH.6.116