Logo
Information on SUBCLASS 5.2.1
Subclass Accession number: 3203
Subclass: 5.2.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 10.9 +/- 14.4
Average RMSD (Å) : 0.732 +/- 0.247

Consensus geometry
d (Å): 13 delta (°): 45-90 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXXpphpXX
(φψ)-conformation: bpaaappaa
Pattern: xxx[dehknprst]x[adeknrst][ADEGKNQRST][afilmvwy][adepst][dehknprst][adegqrst]xx
Conservation:-1.000-1.000-1.0440.040-1.2260.4881.5001.1481.207-0.5750.309-0.999-0.848
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ag9_A_311ag9   A3244DVHDIAKSSKEDLEEEEGGG--HHHHbbbxaaabbaaaa
1b8a_A_441b8a   A4860ITAPKKKVDPELFEEEETTTS-HHHHbbbxaaabpaaaa
1br9_*_1041br9   -104115.IVPWDTLSTTQK.EEEGGGS-HHHH.bbpaaaxxaaaa
1bt3_A_471bt3   A4860VRPAAHTMDKDAIEE-BGGG--HHHHbxxxaaaxxaaaa
1eex_A_541eex   A5464..KPVSDFDLIDH..EEGGG--HHHH..xxaaapxaaaa
1fp2_A_2901fp2   A290301.VIDKKKDENQVT.EE-TTTS-HHHH.bxbaaaxxaaaa
1g0w_A_1711g0w   A172184RYYALKSMTEAEQEEEEGGG--HHHHbbbxaaaxxaaaa
1g97_A_1491g97   A151163RIVEQKDATDFEKEEE-GGG--HHHHbbbxaaaxxaaaa
1gt9_1_1311gt9   1131141..GPEDSWAPASI..EEGGGS-HHHH..bpaaaxxaaaa
1h16_A_7361h16   A736747.AVRFNSLTKEQQ.EEEGGGS-HHHH.bbxaaaxxaaaa
1jj7_A_5671jj7   A567577..KPLPQYEHRYL..EEGGGB-HHHH..bxaaaxxaaaa
1js8_A_25041js8   A25052517IRKNVNSLTPSDIEE-BGGG--HHHHxbbpaaaxxaaaa
1jv1_A_2981jv1   A300312QVVEYSEISLATAEEE-GGGS-HHHHbbxxaaaxxaaaa
1jvw_A_1121jvw   A112124TTFRPNEVIKGWTEEE-GGGS-HHHHbxbxaaabxaaaa
1k7k_A_1671k7k   A167177..KTAAELTREEK..EEGGGS-HHHH..bxaaaxxaaaa
1kl9_A_811kl9   A8294IDLSKRRVSPEEAEEEESTT--HHHHbbbbaaaxxaaaa
1kvk_A_3781kvk   A378390SMHSATSIEDPVREEE-TTTS-HHHHbbbxaaaxpaaaa
1l2t_A_671l2t   A6777..IKTNDLDDDEL..EE-TT--HHHH..bxaaaxxaaaa
1lni_A_51lni   A516.TVCLSALPPEAT.EEEGGGS-HHHH.bbxaaaxpaaaa
1m44_A_91m44   A921RLVHTADLDSETREEEEGGG--HHHHbxbxaaaxxaaaa
1mgr_A_71mgr   A719GRVCYSALPSQAHEEEEGGGS-HHHHxbbxaaaxxaaaa
1n16_A_1711n16   A172184KYYPLSSMSDAEQEEEEGGGS-HHHHbbbxaaabxaaaa
1no5_A_781no5   A7991DLLDWATTSEDFREEEEGGGS-HHHHxxbxaaaxxaaaa
1nyk_A_1031nyk   A106118ARFDPEELAPEVAEE--GGGS-HHHHbbbpaaaxxaaaa
1p32_A_2251p32   A225236.TLNTDSLDWALY.EEESTT--HHHH.bxxaaaxpaaaa
1q6h_A_1661q6h   A166178LSFRLDGVIPGWTEEEEGGGS-HHHHxbbxaaabpaaaa
1qau_A_701qau   A7080..RPLVDLSYDSA..EE-TTS-HHHH..bxaaabxaaaa
1qh4_A_1711qh4   A172184KYYALRNMTDAEQEEEEGGG--HHHHbxbxaaapxaaaa
1sio_A_1311sio   A131141..GPEDSWTSAAI..EEGGGS-HHHH..bwaaaxxaaaa
2crk_A_1712crk   A172184KYYPLKSMTEQEQEEEESTT--HHHHbbbxaaaxxaaaa
3gcb_*_4143gcb   -418430IVVDINELPKELAEEEEGGGS-HHHHbbbxaaaxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fp2_A_2901fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE M - 307
1fp2_A_2901fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE N - 310
1g97_A_1491g97   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE I - 152
1g97_A_1491g97   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE E - 154
1h16_A_7361h16   A     DTLD-TREITOL S - 741
1h16_A_7361h16   A     DTLD-TREITOL L - 742
1h16_A_7361h16   A     DTLD-TREITOL T - 743
1h16_A_7361h16   A     DTLD-TREITOL Q - 746
1jv1_A_2981jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE V - 301
1jv1_A_2981jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE E - 303
1jv1_A_2981jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE Y - 304
1kl9_A_811kl9   A     MSESELENOMETHIONINE I - 82
1kl9_A_811kl9   A     MSESELENOMETHIONINE D - 83
1kl9_A_811kl9   A     MSESELENOMETHIONINE L - 84
1kl9_A_811kl9   A     MSESELENOMETHIONINE S - 85
1kl9_A_811kl9   A     MSESELENOMETHIONINE A - 94
1kl9_A_811kl9   A     MSESELENOMETHIONINE C - 97
1kl9_A_811kl9   A     MSESELENOMETHIONINE E - 98
1kl9_A_811kl9   A     MSESELENOMETHIONINE F - 101
1kl9_A_811kl9   A     ZNZINC ION H - 113
1kl9_A_811kl9   A     ZNZINC ION E - 116
1lni_A_51lni   A     GOLGLYCEROL T - 5
1lni_A_51lni   A     GOLGLYCEROL V - 6
1lni_A_51lni   A     GOLGLYCEROL C - 7
1no5_A_781no5   A     ZNZINC ION D - 79
1no5_A_781no5   A     ZNZINC ION L - 80
1no5_A_781no5   A     ZNZINC ION L - 81
1no5_A_781no5   A     GOLGLYCEROL W - 83
1no5_A_781no5   A     GOLGLYCEROL A - 84
1no5_A_781no5   A     GOLGLYCEROL T - 85
1no5_A_781no5   A     GOLGLYCEROL T - 86
1no5_A_781no5   A     GOLGLYCEROL S - 87
1no5_A_781no5   A     ZNZINC ION E - 88
1no5_A_781no5   A     GOLGLYCEROL E - 88
1no5_A_781no5   A     GOLGLYCEROL R - 91
1no5_A_781no5   A     ZNZINC ION E - 92
1no5_A_781no5   A     ZNZINC ION R - 95
1nyk_A_1031nyk   A     MGMAGNESIUM ION E - 112
1nyk_A_1031nyk   A     MGMAGNESIUM ION L - 113
1nyk_A_1031nyk   A     MGMAGNESIUM ION A - 114
3gcb_*_4143gcb   *     GOLGLYCEROL V - 419
3gcb_*_4143gcb   *     GOLGLYCEROL V - 420
3gcb_*_4143gcb   *     GOLGLYCEROL D - 421

Clusters included in this Subclass
CLUSTER: EH.4.226
CLUSTER: EH.5.128
CLUSTER: EH.5.249
CLUSTER: EH.5.255
CLUSTER: EH.5.33
CLUSTER: EH.6.183
CLUSTER: EH.6.279
CLUSTER: EH.6.48
CLUSTER: EH.6.50
CLUSTER: EH.7.108