ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 6.38.1

Subclass Accession number: 3378
Subclass: 6.38.1

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 5

Average sequence ID (%) : 44.3 +/- 26.6
Average RMSD (Å) : 0.260 +/- 0.055

Consensus geometry

d (Å): 19

delta (°): 0-45

theta (°): 45-90

rho (°): 270-315

Consensus Sequence:	hpLAhQXXhX
(φψ)-conformation:	bpapbpapaa

Pattern:	[es]	[CIV]	[FY]	[HN]	[LM]	[AG]	[AG]	[Q]	[PSV]	[fhl]	[MV]	[AGKRT]	[AILTV]	[S]
Conservation:	-1.140	-0.150	1.399	0.991	0.504	0.066	0.033	1.561	-1.107	-1.261	0.234	-1.236	-0.850	0.958

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1n7h_A_109	1n7h	A	109	122	EVYNLAAQSHVAVS	EEEE--S---HHHH	bbbxaxbxaxaaaa
1orr_A_76	1orr	A	76	89	SCFHLAGQVAMTTS	EEEE------HHHH	bbbxaxbxaxaaaa
1rkx_A_83	1rkx	A	83	96	IVFHMAAQPLVRLS	EEEE--S---HHHH	bbbxaxbxaxaaaa
1rpn_A_77	1rpn	A	77	90	EVYNLAAQSFVGAS	EEEE--S---HHHH	bbbxaxbxaxaaaa
1t2a_A_104	1t2a	A	104	117	EIYNLGAQSHVKIS	EEEE--S---HHHH	bbbxaxbxaxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	N - 112
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	L - 113
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 114
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 115
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Q - 116
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 117
1n7h_A_109	1n7h	A	GDPGUANOSINE-5'-DIPHOSPHATE	S - 117
1n7h_A_109	1n7h	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	H - 118
1n7h_A_109	1n7h	A	GDPGUANOSINE-5'-DIPHOSPHATE	H - 118
1n7h_A_109	1n7h	A	GDPGUANOSINE-5'-DIPHOSPHATE	V - 119
1n7h_A_109	1n7h	A	GDPGUANOSINE-5'-DIPHOSPHATE	A - 120
1orr_A_76	1orr	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 79
1orr_A_76	1orr	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	L - 80
1orr_A_76	1orr	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 81
1orr_A_76	1orr	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 82
1orr_A_76	1orr	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 83
1orr_A_76	1orr	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 84
1orr_A_76	1orr	A	CDPCYTIDINE-5'-DIPHOSPHATE	M - 86
1rkx_A_83	1rkx	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	M - 87
1rkx_A_83	1rkx	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 88
1rkx_A_83	1rkx	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 89
1rkx_A_83	1rkx	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 90
1rkx_A_83	1rkx	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	P - 91
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	N - 80
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	L - 81
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 82
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 83
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Q - 84
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 85
1rpn_A_77	1rpn	A	GDPGUANOSINE-5'-DIPHOSPHATE	S - 85
1rpn_A_77	1rpn	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	F - 86
1rpn_A_77	1rpn	A	GDPGUANOSINE-5'-DIPHOSPHATE	F - 86
1rpn_A_77	1rpn	A	GDPGUANOSINE-5'-DIPHOSPHATE	V - 87
1rpn_A_77	1rpn	A	GDPGUANOSINE-5'-DIPHOSPHATE	G - 88
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	N - 107
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	L - 108
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	G - 109
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	A - 110
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	Q - 111
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	S - 112
1t2a_A_104	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	S - 112
1t2a_A_104	1t2a	A	NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	H - 113
1t2a_A_104	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	H - 113
1t2a_A_104	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	V - 114
1t2a_A_104	1t2a	A	GDPGUANOSINE-5'-DIPHOSPHATE	K - 115

Clusters included in this Subclass

CLUSTER: EH.5.163