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PDB code:

Information on SUBCLASS 12.1.1

Subclass Accession number: 8039 Subclass: 12.1.1 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 18 Average sequence ID (%) : 44.5 +/- 26.8 Average RMSD (Å) : 0.350 +/- 0.150 Consensus geometry d (Å): 1 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a0j_A_81	1a0j	A	81	108	QFIDSVKVIMHPSYNSRNLDNDIMLIKL	EEEEEEEEEE-TT-BTTTTBT--EEEEE	bbbxxabbbxpaapbaaalxvxbbbbxx
1a5h_A_81	1a5h	A	81	108	QKFEVEKYIVHKEFDDDTYDNDIALLQL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bxbbxabbxbpaaxbaaavxvxbbbbxx
1a5i_A_81	1a5i	A	81	108	QTFKVKKYIVHKEFDDDTYNNDIALLQL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbbxabbbbpaaxxaaavxvxbbbbxx
1cgh_A_81	1cgh	A	81	108	QHITARRAIRHPQYNQRTIQNDIMLLQL	EEEEEEEEEE-TT-BTTTTBS--EEEEE	bbbxxabbxxpaapbaaavxlxbbbbxx
1eax_A_81	1eax	A	81	108	QERRLKRIISHPFFNDFTFDYDIALLEL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxbabbbxpaapbaaavxlxbbbbxx
1ekb_B_81	1ekb	B	81	108	ETRLIDQIVINPHYNKRRKNNDIAMMHL	EEEEEEEEEE-TT-BTTTTBS--EEEEE	bbbxxabbbxpaaxbaaalxvxbbxbxx
1euf_A_81	1euf	A	81	108	QVIPVRRPIPHPDYNDETLANDIMLLKL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxxabwbxxaapbaaavxlxbbbbxx
1f7z_A_81	1f7z	A	81	108	QFVNAAKIIKHPNFDRKTLNNDIMLIKL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxxabbbxpaaxbaaavxvxbbbbxx
1fni_A_81	1fni	A	81	108	QFINAAKIITHPNFNGNTLDNDIMLIKL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxxabbbxpaapbaaavxvxbbbbxx
1gg6_B_81	1gg6	B	81	108	QKLKIAKVFKNSKYNSLTINNDITLLKL	EEEEEEEEEE-TT-BTTTTBS--EEEEE	bxbxbabbbxpaapbaaalblxbbbbxx
1h4w_A_81	1h4w	A	81	108	QFINAVKIIRHPKYNRDTLDNDIMLIKL	EEEEEEEEEE-TT-BTTTTBT--EEEEE	bbbxxabbbxxaaxbaaavxlxbbbbxx
1hj8_A_81	1hj8	A	81	108	QFISSSRVIRHPNYSSYNIDNDIMLIKL	EEEEEEEEEE-TT-BTTTTBS--EEEEE	bbbxxabbbxpaapbaaalxlxbbbbxx
1hj9_A_81	1hj9	A	81	108	QFISASKSIVHPSYNSNTLNNDIMLIKL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxxabbbxpaapbaaavxvxbbbbxx
1iau_A_81	1iau	A	81	108	QFIPVKRPIPHPAYNPKNFSNDIMLLQL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bxbxxabwbxpaaxbaaaUxvxbbbbxx
1kdq_A_81	1kdq	A	81	108	QVLKIAQVFKNPKFNMFTVRNDITLLKL	EEEEEEEEEE-TT--SSS--S--EEEEE	bxxbbabbbxpaabbaaalblxbbbbbx
1lo6_A_81	1lo6	A	81	108	EQSSVVRAVIHPDYDAASHDQDIMLLRL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxbabbbxpaapbaaavxlxbbbbxx
1nn6_A_83	1nn6	A	83	110	QKLEVIKQFRHPKYNTSTLHHDIMLLKL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bxbxxabxbxpaaxbaaavxvxbbbbxx
1trn_A_81	1trn	A	81	108	QFINAAKIIRHPQYDRKTLNNDIMLIKL	EEEEEEEEEE-TT--TTT-TT--EEEEE	bbbxxabbbxpaaxbaaavxvxbbbbxx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a5h_A_81	1a5h	A	BBA2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE	D - 96
1a5h_A_81	1a5h	A	BBA2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE	D - 97
1a5h_A_81	1a5h	A	BBA2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE	T - 98
1a5h_A_81	1a5h	A	BBA2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE	Y - 99
1a5h_A_81	1a5h	A	BBA2,7-BIS-(4-AMIDINOBENZYLIDENE)-CYCLOHEPTAN-1-ONE	D - 100
1a5i_A_81	1a5i	A	CH2METHYLENE GROUP	Y - 99
1cgh_A_81	1cgh	A	SINSUCCINIC ACID	I - 99
1cgh_A_81	1cgh	A	PPHPHENYLALANINE PHOSPHINIC ACID	D - 102
1ekb_B_81	1ekb	B	CH2METHYLENE GROUP	D - 102
1ekb_B_81	1ekb	B	ZNZINC ION	H - 107
1euf_A_81	1euf	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 82
1euf_A_81	1euf	A	NAGN-ACETYL-D-GLUCOSAMINE	P - 84
1fni_A_81	1fni	A	CACALCIUM ION	F - 82
1gg6_B_81	1gg6	B	APLN-(1-BENZYL-3,3,3-TRIFLUORO-2,2-DIHYDROXY-PROPYL)-ACETAMIDE	K - 82
1gg6_B_81	1gg6	B	EDO1,2-ETHANEDIOL	S - 96
1gg6_B_81	1gg6	B	EDO1,2-ETHANEDIOL	L - 97
1gg6_B_81	1gg6	B	EDO1,2-ETHANEDIOL	T - 98
1gg6_B_81	1gg6	B	APF1,1,1-TRIFLUORO-3-ACETAMIDO-4-PHENYL BUTAN-2-ONE(N-ACETYL-L-PHENYLALANYL TRIFLUOROMETHYL KETONE)	I - 99
1gg6_B_81	1gg6	B	EDO1,2-ETHANEDIOL	I - 99
1hj8_A_81	1hj8	A	BAMBENZAMIDINE	Q - 81
1hj8_A_81	1hj8	A	BAMBENZAMIDINE	F - 82
1hj9_A_81	1hj9	A	GOLGLYCEROL	Q - 81
1hj9_A_81	1hj9	A	GOLGLYCEROL	F - 82
1hj9_A_81	1hj9	A	GOLGLYCEROL	I - 83
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 82
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 93
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 95
1iau_A_81	1iau	A	FUCFUCOSE	N - 95
1iau_A_81	1iau	A	FUCFUCOSE	K - 97
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 98
1iau_A_81	1iau	A	FUCFUCOSE	N - 98
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 99
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 100
1iau_A_81	1iau	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 101
1lo6_A_81	1lo6	A	MGMAGNESIUM ION	D - 93
1lo6_A_81	1lo6	A	MGMAGNESIUM ION	Y - 94
1lo6_A_81	1lo6	A	MGMAGNESIUM ION	D - 95
1nn6_A_83	1nn6	A	NAGN-ACETYL-D-GLUCOSAMINE	Y - 96
1nn6_A_83	1nn6	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 97
1nn6_A_83	1nn6	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 98
1nn6_A_83	1nn6	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 99
1nn6_A_83	1nn6	A	NAGN-ACETYL-D-GLUCOSAMINE	T - 100

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h4w_A_81	1h4w	A	CATCATALYTIC TRIAD	D - 102
1hj8_A_81	1hj8	A	BM2BAM BINDING SITE FOR RESIDUE A248	F - 82

Clusters included in this Subclass

CLUSTER: HA.12.1

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