Information on SUBCLASS 2.2.16 |
Subclass Accession number: 486
Subclass: 2.2.16 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0046914 (>75 %) |
Number of loops: 7 Average sequence ID (%) : 16.8 +/- 15.4 Average RMSD (Å) : 0.914 +/- 0.227 Consensus geometry
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Consensus Sequence: | XpXXGX |
(φψ)-conformation: | bbaaeb |
Pattern: | x | x | x | x | [ACGIKTV] | [AFGKLV] | x | [GNT] | [hknpr] | [efhqy] | [G] | [cltv] | [ltv] |
Conservation: | -0.160 | -0.590 | -0.153 | -0.369 | -0.590 | -0.593 | -0.578 | 0.670 | -0.484 | -0.164 | 3.114 | -0.152 | 0.052 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b6r_A_221 | 1b6r | A | 223 | 235 | MAMECFVTPQGLL | EEEEEEEETTEEE | bbbxbbxbaaexb |
1cs6_A_365 | 1cs6 | A | 366 | 378 | MYQCVAENKHGTV | EEEEEEEETTEEE | xbbbbbbbaaebb |
1ex0_A_155 | 1ex0 | A | 158 | 170 | RMYVAVWTPYGVL | EEEEEEEETTEEE | xbbbbbxbaaebx |
1g1c_A_75 | 1g1c | A | 76 | 88 | SIMVKAINIAGET | EEEEEEEETTEEE | xbbbbbbbaaebb |
1lld_A_275 | 1lld | A | 276 | 288 | MSVPTLLNRQGVN | EEEEEEEETTEEE | bxbwbxbbaaebb |
1oxx_K_245 | 1oxx | K | 245 | 257 | NELEGKVTNEGVV | EEEEEEEETTEEE | xbbbbxxbaaexx |
1r0p_A_1076 | 1r0p | A | 1080 | 1092 | FNEVIGRGHFGCV | EEEEEEEETTEEE | aabxabbbaaebb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1oxx_K_245 | 1oxx | K | IODIODIDE ION | K - 250 |
1oxx_K_245 | 1oxx | K | IODIODIDE ION | T - 252 |
1oxx_K_245 | 1oxx | K | IODIODIDE ION | N - 253 |
1oxx_K_245 | 1oxx | K | IODIODIDE ION | E - 254 |
1oxx_K_245 | 1oxx | K | IODIODIDE ION | G - 255 |
1oxx_K_245 | 1oxx | K | IODIODIDE ION | V - 256 |
1r0p_A_1076 | 1r0p | A | KSAK-252A | I - 1084 |
1r0p_A_1076 | 1r0p | A | KSAK-252A | G - 1085 |
1r0p_A_1076 | 1r0p | A | KSAK-252A | R - 1086 |
1r0p_A_1076 | 1r0p | A | KSAK-252A | G - 1087 |
1r0p_A_1076 | 1r0p | A | KSAK-252A | F - 1089 |
1r0p_A_1076 | 1r0p | A | KSAK-252A | V - 1092 |
Clusters included in this Subclass |
CLUSTER: HA.3.59 |