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Information on SUBCLASS 2.2.5
Subclass Accession number: 475
Subclass: 2.2.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 9.6 +/- 12.5
Average RMSD (Å) : 0.468 +/- 0.154

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXppXX
(φψ)-conformation: bbaabb
Pattern: [aikltv]xx[DEGNST][adeknqrs][dehknqrty]xxx[afgilmvwy]
Conservation:0.452-0.576-0.6151.6771.739-0.330-0.961-0.7770.156-0.765
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acf_*_651acf   -7079LRADDRSIYGEEESSSEEEEabbbaabbbb
1bj7_*_851bj7   -91100IHVSENMLVTEEE-SSEEEEabbbaabbbb
1bpy_A_2241bpy   A228237LSKGETKFMGEEE-SSEEEEabbbaabbbb
1bup_A_71bup   A918IDLGSTYSCVEEE-SSEEEEbxxxaabbbb
1ecs_A_271ecs   A2938VFRDAGWMILEEE-SSEEEEabbbaabbbb
1f1s_A_9131f1s   A916925LENSSKQQVIEEE-SSEEEEabbbaabbbb
1f1u_A_421f1u   A4453TEEDENTIYLEEE-SSEEEEabbbaabbbb
1fy7_A_2261fy7   A228237IYRDDYVSFFEEE-SSEEEEabbbaabbbb
1guq_A_2121guq   A213222VVETEHWLAVEEE-SSEEEEabbbaabbbb
1gx3_A_2091gx3   A211220AVVTDDARYNEEE-SSEEEEbbbxaabbbb
1hr6_B_981hr6   B101110AYTSRENTVYEEE-SSEEEEbbbbaabbbb
1j1y_A_791j1y   A8796VNLSRRTATYEEE-SSEEEEabbbaabbbb
1jmx_A_3191jmx   A325334LEQTPTLVRLEEE-SSEEEEabbbaabbxb
1k9a_A_1951k9a   A201210IGKGEFGDVMEEE-SSEEEEabbxaabbbb
1kpf_*_311kpf   -3241IFEDDRCLAFEEE-SSEEEEabbbaabbbb
1kyf_A_7141kyf   A716725LFENQLLQIGEEE-SSEEEEabbbaabbbb
1m93_B_2781m93   B284293IDVNEEYTEAEEE-SSEEEEbbbbaabbbb
1mp2_A_81mp2   A1423LHTGAIFALREEE-SSEEEEabbbaabbbb
1nbw_A_31nbw   A716IDIGNATTEVEEE-SSEEEEbbxxaabbbb
1obd_A_141obd   A1524VARGKVRDIYEEE-SSEEEEabbxaabbbb
1ooy_A_4291ooy   A429438RIITEKAVFDEEE-SSEEEEbbbbaabbbx
1orv_A_4041orv   A408417EALTSDYLYYEEE-SSEEEEabbbaabbbb
1pam_A_5411pam   A542551VAWEDTQIQVEEE-SSEEEEabbbaabbbb
1prz_A_861prz   A8796VYEDEDIIVIEEE-SSEEEEabbbaabbbb
1psu_A_951psu   A101110RHQGKQTGVYEEE-SSEEEEabbxaabbbb
1q4t_A_1081q4t   A116125IHAGSTTWFWEEE-SSEEEEabbxaabbbb
1q4t_A_371q4t   A3948DEMTPERATAEEE-SSEEEEaxbbaabbbb
1qft_A_1071qft   A113122AYSDDNCDVIEEEETTEEEEabbbaabbbb
1qho_A_4091qho   A413422RWINNDVYIYEEE-SSEEEEabbbaabbbb
1qho_A_5381qho   A539548KSWTSNRIEVEEE-SSEEEEabbbaabbbb
1s16_A_12331s16   A12411250NFAGDTEAVDEEE-SSEEEEbbbbaabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bpy_A_2241bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE K - 234
1bpy_A_2241bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE M - 236
1bup_A_71bup   A     MGMAGNESIUM ION D - 10
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE D - 10
1bup_A_71bup   A     PIHYDROGENPHOSPHATE ION D - 10
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE L - 11
1bup_A_71bup   A     PIHYDROGENPHOSPHATE ION L - 11
1bup_A_71bup   A     MGMAGNESIUM ION G - 12
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE G - 12
1bup_A_71bup   A     PIHYDROGENPHOSPHATE ION G - 12
1bup_A_71bup   A     MGMAGNESIUM ION S - 13
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE S - 13
1bup_A_71bup   A     PIHYDROGENPHOSPHATE ION S - 13
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE T - 14
1bup_A_71bup   A     PIHYDROGENPHOSPHATE ION T - 14
1bup_A_71bup   A     MGMAGNESIUM ION Y - 15
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 15
1bup_A_71bup   A     PIHYDROGENPHOSPHATE ION Y - 15
1bup_A_71bup   A     ADPADENOSINE-5'-DIPHOSPHATE S - 16
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL V - 29
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL F - 30
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL W - 35
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL I - 37
1ecs_A_271ecs   A     PG4TETRAETHYLENE GLYCOL Q - 39
1kpf_*_311kpf   *     AMPADENOSINE MONOPHOSPHATE F - 41
1kpf_*_311kpf   *     AMPADENOSINE MONOPHOSPHATE H - 42
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE A - 16
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE R - 17
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE G - 18
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 19
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE V - 20
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE R - 21
1obd_A_141obd   A     MGMAGNESIUM ION R - 21
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 22
1obd_A_141obd   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 23
1orv_A_4041orv   A     SULSULFATE ANION I - 405
1orv_A_4041orv   A     SULSULFATE ANION G - 406
1orv_A_4041orv   A     SULSULFATE ANION I - 407
1orv_A_4041orv   A     SULSULFATE ANION E - 408
1prz_A_861prz   A     MSESELENOMETHIONINE Y - 88
1prz_A_861prz   A     MSESELENOMETHIONINE D - 90
1prz_A_861prz   A     MSESELENOMETHIONINE I - 93
1prz_A_861prz   A     MSESELENOMETHIONINE I - 94
1prz_A_861prz   A     MSESELENOMETHIONINE V - 95
1prz_A_861prz   A     MSESELENOMETHIONINE I - 96
1psu_A_951psu   A     MSESELENOMETHIONINE T - 95
1qft_A_1071qft   A     HSMHISTAMINE F - 108
1qft_A_1071qft   A     HSMHISTAMINE D - 110
1qft_A_1071qft   A     HSMHISTAMINE D - 120
1qft_A_1071qft   A     HSMHISTAMINE I - 122
1qft_A_1071qft   A     HSMHISTAMINE V - 124
1qho_A_4091qho   A     MALMALTOSE Q - 412
1qho_A_4091qho   A     MALMALTOSE R - 413
1qho_A_4091qho   A     MALMALTOSE W - 414
1qho_A_4091qho   A     MALMALTOSE I - 415
1qho_A_4091qho   A     MALMALTOSE N - 416
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1obd_A_141obd   A AC2ATP BINDING SITE FOR CHAIN AG - 18
1obd_A_141obd   A AC2ATP BINDING SITE FOR CHAIN AK - 19
1obd_A_141obd   A AC2ATP BINDING SITE FOR CHAIN AR - 21

Clusters included in this Subclass
CLUSTER: HA.2.13
CLUSTER: HA.4.20