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Information on SUBCLASS 2.5.11
Subclass Accession number: 6147
Subclass: 2.5.11 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 11.9 +/- 12.0
Average RMSD (Å) : 0.667 +/- 0.153

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXpXXL
(φψ)-conformation: bbllbb
Pattern: [ALW][IKM][RY]x[CFW][AFT]x[HLM][FT][DNY]xx[L][DSY]
Conservation:-0.532-0.4281.256-0.6350.815-0.532-1.568-0.1170.567-0.117-0.014-0.6352.472-0.532
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f4x_H_921f4x   H92105AMYYCTRHFYAVLDEEEEEEEEETTEEEbxbbbbbxxvvbxa
1fgy_A_2811fgy   A281294WKRRWFILTDNCLYEEEEEEEEETTEEExbxbxxbxbllbbx
1hkk_A_531hkk   A5467LIYAFAGMTNHQLSEEEEEEEEETTEEEbbxbwxbbblvbpb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f4x_H_921f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE H - 99
1f4x_H_921f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE F - 100
1f4x_H_921f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE Y - 101
1f4x_H_921f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE A - 102
1f4x_H_921f4x   H     MGS1,2-O-DIMETHYL-4-[2,4-DIHYDROXY-BUTYRAMIDO]-4,6-DIDEOXY-ALPHA-D-MANNOPYRANOSIDE V - 103
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE W - 281
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE K - 282
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE R - 284
1fgy_A_2811fgy   A     4IPINOSITOL-(1,3,4,5)-TETRAKISPHOSPHATE Y - 295
1hkk_A_531hkk   A     AMIALLOSAMIZOLINE A - 57
1hkk_A_531hkk   A     NAAN-ACETYL-D-ALLOSAMINE F - 58
1hkk_A_531hkk   A     AMIALLOSAMIZOLINE F - 58
1hkk_A_531hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS H - 64
1hkk_A_531hkk   A     ZNZINC ION H - 64
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkk_A_531hkk   A AC2NAA BINDING SITE FOR CHAIN AF - 58
1hkk_A_531hkk   A AC8ZN2 BINDING SITE FOR CHAIN AH - 64

Clusters included in this Subclass
CLUSTER: HA.2.171