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Information on SUBCLASS 2.5.2
Subclass Accession number: 558
Subclass: 2.5.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 18.1 +/- 20.7
Average RMSD (Å) : 0.792 +/- 0.155

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XpphGX
(φψ)-conformation: bbpleb
Pattern: [gikltv]x[eknqsty]x[GY]xx
Conservation:-0.497-0.526-0.271-0.3262.256-0.286-0.350
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bj7_*_771bj7   -8086LEFYGTNEESSSEEbxblexb
1cb8_A_4971cb8   A498504ISTAGKTEETTEEEbbxvebx
1df9_A_1171df9   A117123KTNAGTIEESSSEEbxbvexb
1dzk_A_771dzk   A8086VNYAGNNEESSSEEbxblebb
1e5p_A_721e5p   A7480TQFEGNNEESSSEEbxblexb
1i8a_A_1161i8a   A122128LIEGGYIEETTEEExbxvebb
1j58_A_581j58   A5965LEKGGYAEETTEEExbxgebb
1l0w_A_3501l0w   A354360VEEGGFSEETTEEEbbxvebb
1m56_B_1341m56   B140146GYQWYWGEETTEEExbpvebb
1nw1_A_1411nw1   A144150IFSGGRLEETTEEEbbxvebb
1plq_*_2351plq   -240246DLKSGFLEETTEEExbxvebb
1qy1_A_801qy1   A8288VTYDGFNEESSSEEbxblebb
1v54_B_951v54   B101107GHQWYWSEETTEEExbxvebb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dzk_A_771dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE V - 80
1dzk_A_771dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE Y - 82
1dzk_A_771dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE N - 86
1dzk_A_771dzk   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE F - 88
1e5p_A_721e5p   A     MSESELENOMETHIONINE Y - 72
1e5p_A_721e5p   A     MSESELENOMETHIONINE E - 77
1e5p_A_721e5p   A     MSESELENOMETHIONINE G - 78
1e5p_A_721e5p   A     MSESELENOMETHIONINE N - 79
1e5p_A_721e5p   A     MSESELENOMETHIONINE N - 80
1e5p_A_721e5p   A     MSESELENOMETHIONINE F - 82
1e5p_A_721e5p   A     MSESELENOMETHIONINE P - 84
1i8a_A_1161i8a   A     CACALCIUM ION E - 130
1j58_A_581j58   A     MSESELENOMETHIONINE Y - 64
1j58_A_581j58   A     MSESELENOMETHIONINE A - 65
1m56_B_1341m56   B     CUCOPPER (II) ION Y - 141
1m56_B_1341m56   B     CUCOPPER (II) ION Q - 142
1m56_B_1341m56   B     CUCOPPER (II) ION W - 143
1m56_B_1341m56   B     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE Y - 144
1m56_B_1341m56   B     CUCOPPER (II) ION W - 145
1plq_*_2351plq   *     HGMERCURY (II) ION F - 248
1qy1_A_801qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE V - 82
1qy1_A_801qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE Y - 84
1qy1_A_801qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE N - 88
1qy1_A_801qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE F - 90
1qy1_A_801qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE T - 91
1v54_B_951v54   B     CUCOPPER (II) ION H - 102
1v54_B_951v54   B     CUADINUCLEAR COPPER ION H - 102
1v54_B_951v54   B     CUCOPPER (II) ION W - 104
1v54_B_951v54   B     CUADINUCLEAR COPPER ION W - 104
1v54_B_951v54   B     CUCOPPER (II) ION W - 106
1v54_B_951v54   B     CUADINUCLEAR COPPER ION W - 106

Clusters included in this Subclass
CLUSTER: HA.2.28