Information on SUBCLASS 2.5.4 |
Subclass Accession number: 560
Subclass: 2.5.4 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0003677 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 5.8 +/- 7.9 Average RMSD (Å) : 0.580 +/- 0.148 Consensus geometry
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Consensus Sequence: | XXhhph |
(φψ)-conformation: | abplbb |
Pattern: | [rty] | x | [aeqs] | [AGRST] | [lpvy] | [agn] | x | [ewy] | [DSV] | x | [APVY] | x |
Conservation: | 0.883 | 0.159 | -0.427 | 0.094 | -1.142 | 0.198 | -0.101 | 2.534 | -0.171 | -1.402 | -0.180 | -0.444 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1i2m_A_39 | 1i2m | A | 39 | 50 | YVATLGVEVHPL | EEEETTEEEEEE | bxabpUbxbbwb |
1m3q_A_48 | 1m3q | A | 48 | 59 | REQSPAHWSGVL | EEEETTEEEEEE | bxabpvbbbexb |
1pcf_A_63 | 1pcf | A | 64 | 75 | FQIGKMRYVSVR | EEEETTEEEEEE | bxabxvbbxbbb |
1sac_A_57 | 1sac | A | 64 | 75 | YKERVGEYSLYI | EEEETTEEEEEE | bbabpvbbbbbb |
2ayh_*_47 | 2ayh | - | 52 | 63 | TSSAYNKFDCAE | EEEETTEEEEEE | bbabpvbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1sac_A_57 | 1sac | A | CACALCIUM ION | D - 58 |
1sac_A_57 | 1sac | A | CACALCIUM ION | N - 59 |
1sac_A_57 | 1sac | A | CACALCIUM ION | L - 62 |
Clusters included in this Subclass |
CLUSTER: HA.1.37 |