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Information on SUBCLASS 2.5.4
Subclass Accession number: 560
Subclass: 2.5.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
GO : GO:0003677 (>75 %)  
Number of loops: 5

Average sequence ID (%) : 5.8 +/- 7.9
Average RMSD (Å) : 0.580 +/- 0.148

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXhhph
(φψ)-conformation: abplbb
Pattern: [rty]x[aeqs][AGRST][lpvy][agn]x[ewy][DSV]x[APVY]x
Conservation:0.8830.159-0.4270.094-1.1420.198-0.1012.534-0.171-1.402-0.180-0.444
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i2m_A_391i2m   A3950YVATLGVEVHPLEEEETTEEEEEEbxabpUbxbbwb
1m3q_A_481m3q   A4859REQSPAHWSGVLEEEETTEEEEEEbxabpvbbbexb
1pcf_A_631pcf   A6475FQIGKMRYVSVREEEETTEEEEEEbxabxvbbxbbb
1sac_A_571sac   A6475YKERVGEYSLYIEEEETTEEEEEEbbabpvbbbbbb
2ayh_*_472ayh   -5263TSSAYNKFDCAEEEEETTEEEEEEbbabpvbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1sac_A_571sac   A     CACALCIUM ION D - 58
1sac_A_571sac   A     CACALCIUM ION N - 59
1sac_A_571sac   A     CACALCIUM ION L - 62

Clusters included in this Subclass
CLUSTER: HA.1.37