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Information on SUBCLASS 2.5.5
Subclass Accession number: 6141
Subclass: 2.5.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 31.7 +/- 26.9
Average RMSD (Å) : 0.583 +/- 0.240

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: pXXGXX
(φψ)-conformation: bbllbp
Pattern: [AST][AIV][QRSY]x[nqy][GS][agrs][fhv]x[CG][GT][FG][ASV][AL][ilv]x
Conservation:0.3770.513-0.560-1.158-0.6521.782-0.801-1.089-1.1541.9710.9700.715-0.2050.387-0.388-0.708
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a7s_*_151a7s   -1732SIQNQGRHFCGGALIHEEEETTEEEEEEEEEEbbbblvxxabbbbxab
1bio_*_301bio   -3247SVQLNGAHLCGGVLVAEEEETTEEEEEEEEEEbxbblvbpabxbbxab
1gdn_A_301gdn   A3247SISRNGGPWCGGSLLNEEEETTEEEEEEEEEExbxblvbxIaebbxab
1gvz_A_301gvz   A3247AVYHQGHFQCGGVLVHEEEETTEEEEEEEEEEbbbblvbxabxebxab
1ssx_A_621ssx   A6277TARIGGAVVGTFAARVEEEETTEEEEEEEEEExxbbvvbxaebxabMp
2pka_A_302pka   A3247AIYHYSSFQCGGVLVNEEEETTEEEEEEEEEEbbbblvbxabbbbxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a7s_*_151a7s   *     EOHETHANOL L - 15
1a7s_*_151a7s   *     EOHETHANOL Q - 19
1a7s_*_151a7s   *     EOHETHANOL Q - 21
1a7s_*_151a7s   *     EOHETHANOL G - 22
1a7s_*_151a7s   *     EOHETHANOL R - 23
1gdn_A_301gdn   A     GOLGLYCEROL I - 30
1gdn_A_301gdn   A     GOLGLYCEROL V - 31
1gvz_A_301gvz   A     GOLGLYCEROL A - 32
1gvz_A_301gvz   A     GOLGLYCEROL Y - 34
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gvz_A_301gvz   A AC3GOL BINDING SITE FOR CHAIN AY - 34

Clusters included in this Subclass
CLUSTER: HA.2.41