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Information on SUBCLASS 2.5.6
Subclass Accession number: 6142
Subclass: 2.5.6 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 20.0 +/- 17.4
Average RMSD (Å) : 0.620 +/- 0.295

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XIccpp
(φψ)-conformation: bbllbb
Pattern: [iklt][afil][RS][fit][ekw]x[DGN][DGT][eqs][CRT]x[ESTY][IKLV]
Conservation:-1.200-1.3481.664-0.962-0.5380.7901.4690.754-0.3120.620-0.884-0.2990.246
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1e3p_A_4861e3p   A492504LISQEINGETHYVEEEEESSS-EEEEbbbbxxlvbxbbb
1ic6_A_2081ic6   A208220ILSTWIGGSTRSIEEEEETTTEEEEEbxbxbxvvbbbbb
1m7b_A_571m7b   A6173TASFEIDTQRIELEEEEE-SS-EEEEbbbbxbllbbxxb
2a2u_A_512a2u   A5567KFRIKENGECRELEEEEESSS-EEEEbbbbxbvUbxxxb
2asi_*_872asi   -93105EDSIAIGDITVTKEEEEESSS-EEEEbbxbbbllbbbxl
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1e3p_A_4861e3p   A     WO4TUNGSTATE(VI)ION A - 489
1m7b_A_571m7b   A     MGMAGNESIUM ION D - 77
1m7b_A_571m7b   A     GTPGUANOSINE-5'-TRIPHOSPHATE D - 77
1m7b_A_571m7b   A     MGMAGNESIUM ION T - 78
1m7b_A_571m7b   A     GTPGUANOSINE-5'-TRIPHOSPHATE T - 78
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE N - 88
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE G - 89
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE L - 90
2asi_*_872asi   *     MANALPHA-D-MANNOSE L - 90
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE D - 112
2asi_*_872asi   *     NAGN-ACETYL-D-GLUCOSAMINE N - 113

Clusters included in this Subclass
CLUSTER: HA.4.138