Information on SUBCLASS 2.5.6 |
Subclass Accession number: 6142
Subclass: 2.5.6 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 20.0 +/- 17.4 Average RMSD (Å) : 0.620 +/- 0.295 Consensus geometry
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Consensus Sequence: | XIccpp |
(φψ)-conformation: | bbllbb |
Pattern: | [iklt] | [afil] | [RS] | [fit] | [ekw] | x | [DGN] | [DGT] | [eqs] | [CRT] | x | [ESTY] | [IKLV] |
Conservation: | -1.200 | -1.348 | 1.664 | -0.962 | -0.538 | 0.790 | 1.469 | 0.754 | -0.312 | 0.620 | -0.884 | -0.299 | 0.246 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e3p_A_486 | 1e3p | A | 492 | 504 | LISQEINGETHYV | EEEEESSS-EEEE | bbbbxxlvbxbbb |
1ic6_A_208 | 1ic6 | A | 208 | 220 | ILSTWIGGSTRSI | EEEEETTTEEEEE | bxbxbxvvbbbbb |
1m7b_A_57 | 1m7b | A | 61 | 73 | TASFEIDTQRIEL | EEEEE-SS-EEEE | bbbbxbllbbxxb |
2a2u_A_51 | 2a2u | A | 55 | 67 | KFRIKENGECREL | EEEEESSS-EEEE | bbbbxbvUbxxxb |
2asi_*_87 | 2asi | - | 93 | 105 | EDSIAIGDITVTK | EEEEESSS-EEEE | bbxbbbllbbbxl |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e3p_A_486 | 1e3p | A | WO4TUNGSTATE(VI)ION | A - 489 |
1m7b_A_57 | 1m7b | A | MGMAGNESIUM ION | D - 77 |
1m7b_A_57 | 1m7b | A | GTPGUANOSINE-5'-TRIPHOSPHATE | D - 77 |
1m7b_A_57 | 1m7b | A | MGMAGNESIUM ION | T - 78 |
1m7b_A_57 | 1m7b | A | GTPGUANOSINE-5'-TRIPHOSPHATE | T - 78 |
2asi_*_87 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 88 |
2asi_*_87 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | G - 89 |
2asi_*_87 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | L - 90 |
2asi_*_87 | 2asi | * | MANALPHA-D-MANNOSE | L - 90 |
2asi_*_87 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | D - 112 |
2asi_*_87 | 2asi | * | NAGN-ACETYL-D-GLUCOSAMINE | N - 113 |
Clusters included in this Subclass |
CLUSTER: HA.4.138 |