Information on SUBCLASS 2.5.8 |
Subclass Accession number: 6144
Subclass: 2.5.8 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 3.2 (>75 %) 3.2.1 (>75 %) 3.2.1.8 (>75 %) GO : GO:0004553 (>75 %) GO:0016798 (>75 %) SCOP : 49898 (>75 %) 49899 (>75 %) 49978 (>75 %) |
Number of loops: 4 Average sequence ID (%) : 52.9 +/- 18.0 Average RMSD (Å) : 0.250 +/- 0.100 Consensus geometry
|
Consensus Sequence: | pXDGXX |
(φψ)-conformation: | bbllbb |
Pattern: | [T] | x | [KLM] | [G] | [EST] | [V] | [ET] | [CST] | [D] | [G] | [AGS] | [ITV] | [Y] | [DNRT] | [IL] | [GWY] | [EKR] | [NT] | [QT] | [R] | [V] | [N] | [AEQ] |
Conservation: | 0.884 | -1.563 | -0.929 | 1.386 | -0.790 | 0.382 | -0.495 | -0.765 | 1.386 | 1.386 | -0.724 | -0.714 | 1.888 | -1.124 | -0.077 | -0.593 | -0.439 | -0.202 | -0.616 | 0.884 | 0.382 | 1.386 | -0.932 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1h1a_A_104 | 1h1a | A | 104 | 126 | TRMGSVTTDGGTYNIYRTQRVNA | EEEEEEEETTEEEEEEEEEEEEE | xxaebbbblvbbbxbbbbbbblb |
1xyn_*_90 | 1xyn | - | 90 | 112 | TVKGTVTSDGATYTIWENTRVNE | EEEEEEEETTEEEEEEEEEEEEE | bxaebbxblvbxbxxbbbbbxlb |
1xyo_A_103 | 1xyo | A | 103 | 125 | TKLGEVTSDGSVYDIYRTQRVNQ | EEEEEEEETTEEEEEEEEEEEEE | xxaebbbblvbxbxxbbbxbblb |
1yna_*_103 | 1yna | - | 103 | 125 | TDLGTVECDGSIYRLGKTTRVNA | EEEEEEEETTEEEEEEEEEEEEE | xxaebbbblvbxbxxbbbbbblb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h1a_A_104 | 1h1a | A | GOLGLYCEROL | R - 123 |
1h1a_A_104 | 1h1a | A | GOLGLYCEROL | A - 126 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h1a_A_104 | 1h1a | A | GOLGOL BINDING SITE FOR CHAIN A | R - 123 |
Clusters included in this Subclass |
CLUSTER: HA.1.75 |