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Information on SUBCLASS 4.1.11
Subclass Accession number: 6246
Subclass: 4.1.11 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 9.2 +/- 12.4
Average RMSD (Å) : 0.582 +/- 0.147

Consensus geometry
d (Å): 3 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XpXXpXXX
(φψ)-conformation: bbaaalbb
Pattern: xxxx[DHNSW]x[adekst][nrsty][gkns][adenqrt][cdhqtwy]x
Conservation:-0.578-0.281-1.031-0.1532.233-1.221-0.0490.6391.398-0.228-0.7750.047
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1acc_*_4581acc   -459470IATYNFENGRVREEEEETTTTEEEbxbxbaaalbxb
1bik_*_391bik   -4152RYFYNGTSMACEEEEEETTTTEEEbbbxbaaalbxb
1clc_*_941clc   -94105TSMFDNDTKETVEEEEETTTTEEEbxbxxaaalbxb
1csn_*_251csn   -2738FEGTNLLNNQQVEEEEETTTTEEEbxbbxaaavxxb
1mpg_A_441mpg   A4960TAIPDIARHTLHEEEEETTTTEEEbbbxbaaalbxx
1mxg_A_1161mxg   A116127DLEWNPFVGDYTEEEEETTTTEEExxbxbaaavbxb
1opj_A_2751opj   A276287YEGVWKKYSLTVEEEEEGGGTEEEbxbbxaaalbxb
1orv_A_3221orv   A327338ICDYDESTGRWIEEEEETTTTEEEbbbxbaaavxbb
1q61_A_551q61   A5869MLVKHMETGNHYEEEEETTTTEEEbxbbxaaavxxb
1r51_A_81r51   A1728KVHKDEKTGVQTEEEE-TTT--EEbbbbxaaavxbb
1r88_A_371r88   A3950LMVPSPSMGRDIEEEEETTTTEEExbxpbaaavbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bik_*_391bik   *     NAGN-ACETYL-D-GLUCOSAMINE F - 43
1bik_*_391bik   *     NAGN-ACETYL-D-GLUCOSAMINE N - 45
1bik_*_391bik   *     NAGN-ACETYL-D-GLUCOSAMINE G - 46
1bik_*_391bik   *     NAGN-ACETYL-D-GLUCOSAMINE T - 47
1bik_*_391bik   *     NAGN-ACETYL-D-GLUCOSAMINE S - 48
1bik_*_391bik   *     NAGN-ACETYL-D-GLUCOSAMINE E - 52
1csn_*_251csn   *     ATPADENOSINE-5'-TRIPHOSPHATE V - 25
1csn_*_251csn   *     ATPADENOSINE-5'-TRIPHOSPHATE I - 26
1csn_*_251csn   *     ATPADENOSINE-5'-TRIPHOSPHATE A - 39
1csn_*_251csn   *     ATPADENOSINE-5'-TRIPHOSPHATE K - 41
1csn_*_251csn   *     ATPADENOSINE-5'-TRIPHOSPHATE E - 43
1mxg_A_1161mxg   A     ACRACARBOSE E - 118
1mxg_A_1161mxg   A     ACRACARBOSE F - 122
1mxg_A_1161mxg   A     ACRACARBOSE T - 129
1mxg_A_1161mxg   A     ACRACARBOSE D - 130
1opj_A_2751opj   A     STI4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE V - 275
1opj_A_2751opj   A     STI4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE A - 288
1opj_A_2751opj   A     STI4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE V - 289
1opj_A_2751opj   A     STI4-(4-METHYL-PIPERAZIN-1-YLMETHYL)-N-[4-METHYL-3-(4-PYRIDIN-3-YL-PYRIMIDIN-2-YLAMINO)-PHENYL]-BENZAMIDE K - 290
1orv_A_3221orv   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 322
1r51_A_81r51   A     FCYFREE CYSTEINE K - 10
1r51_A_81r51   A     FCYFREE CYSTEINE D - 11
1r51_A_81r51   A     FCYFREE CYSTEINE C - 35
1r51_A_81r51   A     FCYFREE CYSTEINE V - 36
1r51_A_81r51   A     FCYFREE CYSTEINE L - 37

Clusters included in this Subclass
CLUSTER: HA.4.58
CLUSTER: HA.5.75