Information on SUBCLASS 4.1.14 |
Subclass Accession number: 6249
Subclass: 4.1.14 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 8 Average sequence ID (%) : 10.4 +/- 11.8 Average RMSD (Å) : 0.487 +/- 0.125 Consensus geometry
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Consensus Sequence: | hcXXpXXX |
(φψ)-conformation: | bbaaalbb |
Pattern: | [gikltv] | x | [CFGITV] | [DNS] | x | [adtv] | [DEKRSTY] | [DEGKR] | [filtvy] | x | x | [HILVWY] |
Conservation: | -0.578 | -0.391 | -0.277 | 2.941 | -0.667 | -0.152 | -0.004 | 0.485 | -0.148 | -0.556 | -0.847 | 0.194 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1k3p_A_57 | 1k3p | A | 57 | 68 | TFIDGDEGILLH | EEEETTTTEEEE | bbbbaaalxbbb |
1lgy_A_51 | 1lgy | A | 55 | 66 | TFTSLLSDTNGY | EEEETTTTEEEE | bbbbaaalxbbb |
1lml_*_506 | 1lml | - | 513 | 524 | VQCDTATRTYSV | EEEETTTTEEEE | bbbxaaalbbbb |
1luz_A_62 | 1luz | A | 68 | 79 | IRVDYTKGYIDV | EEEETTTTEEEE | abbbaaavbbbb |
1mjc_*_5 | 1mjc | - | 10 | 21 | KWFNADKGFGFI | EEEETTTTEEEE | abbxaaavbbbb |
1npe_A_940 | 1npe | A | 953 | 964 | LAFDCVDKVVYW | EEEETTTTEEEE | bbbxaaavbxbb |
1oxd_A_25 | 1oxd | A | 33 | 44 | GEGDATYGKLTL | EEEEGGGTEEEE | ebbbaaalbbbb |
5rub_A_70 | 5rub | A | 72 | 83 | YEVDEARELTKI | EEEETTTTEEEE | abbbaaalbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1luz_A_62 | 1luz | A | MSESELENOMETHIONINE | T - 62 |
1luz_A_62 | 1luz | A | MSESELENOMETHIONINE | V - 63 |
1luz_A_62 | 1luz | A | MSESELENOMETHIONINE | K - 64 |
1luz_A_62 | 1luz | A | MSESELENOMETHIONINE | Y - 81 |
1npe_A_940 | 1npe | A | CDCADMIUM ION | A - 941 |
1npe_A_940 | 1npe | A | CDCADMIUM ION | L - 943 |
1npe_A_940 | 1npe | A | CDCADMIUM ION | H - 944 |
1oxd_A_25 | 1oxd | A | NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE | L - 42 |
1oxd_A_25 | 1oxd | A | NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE | L - 44 |
1oxd_A_25 | 1oxd | A | NYC(5Z)-5-(1H-INDOL-3-YLMETHYLENE)-4H-IMIDAZOL-4-ONE | F - 46 |
Clusters included in this Subclass |
CLUSTER: HA.3.118 |
CLUSTER: HA.5.88 |