Logo
Information on SUBCLASS 4.1.4
Subclass Accession number: 7869
Subclass: 4.1.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 9.3 +/- 14.5
Average RMSD (Å) : 0.379 +/- 0.167

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XpXXXcXX
(φψ)-conformation: bbaaalbb
Pattern: xxxxxx[adgknq][afikltv]xx
Conservation:-1.4180.1670.460-0.253-0.317-0.6242.2460.112-0.373-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ar1_B_1811ar1   B183192WTIPAFAVKQEEEGGGTEEExbbaaavbbb
1arb_*_1031arb   -107116ATYATSDFTLEEETTTTEEEbbbaaalbbb
1bjn_A_1511bjn   A151158.NETIDGIA..EETTTTEE..bxaaavbb.
1bk1_*_161bk1   -1827TYDESAGTFSEEEGGGTEEEbbbaaavbbb
1bt4_A_1511bt4   A151158.NETIEGAQ..EETTTTEE..bxaaavbb.
1cyx_*_1721cyx   -174183FFIPRLGSQIEEEGGGTEEExbbaaalbbb
1ji1_A_5551ji1   A560569ITDDTNKIYSEEETTTTEEEbbbaaalbbb
1ji2_A_5041ji2   A509518HADKQANLYAEEETTTTEEEbbbaaalbbb
1ksi_A_2541ksi   A262271IYDLEKHKSREEETTTTEEEbxxaaalbxb
1lcy_A_281lcy   A3544DRHPFLGREVEEETTTTEEExxbaaalbbb
1m56_B_2171m56   B219228WTVPAFGVKQEEEGGGTEEEbbbaaavbbb
1qd6_C_2061qd6   C213222QYNWNTGYGGEE-TTT--EEbbxaaavxbb
1tfr_*_1951tfr   -195203KGDKKDNVA.HEEGGGTEE.aebaaavxb.
2blt_A_3232blt   A327336AFIPEKQIGIEEEGGGTEEEbbbaaavbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ar1_B_1811ar1   B     CUCOPPER (II) ION H - 181
1ar1_B_1811ar1   B     CUCOPPER (II) ION A - 182
1ar1_B_1811ar1   B     MGMAGNESIUM ION A - 182
1ar1_B_1811ar1   B     MGMAGNESIUM ION D - 193
1bjn_A_1511bjn   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) N - 151
1bjn_A_1511bjn   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) E - 152
1bjn_A_1511bjn   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) T - 153
1bt4_A_1511bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 151
1bt4_A_1511bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 152
1bt4_A_1511bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 153
1cyx_*_1721cyx   *     CUADINUCLEAR COPPER ION H - 172
1cyx_*_1721cyx   *     CUADINUCLEAR COPPER ION S - 173
1ksi_A_2541ksi   A     MNMANGANESE (II) ION Y - 275
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE L - 282
1ksi_A_2541ksi   A     TPQ5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE V - 284
1m56_B_2171m56   B     CUCOPPER (II) ION H - 217
1m56_B_2171m56   B     CUCOPPER (II) ION S - 218
1m56_B_2171m56   B     MGMAGNESIUM ION S - 218
1m56_B_2171m56   B     MGMAGNESIUM ION D - 229
1tfr_*_1951tfr   *     MGMAGNESIUM ION D - 200
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ar1_B_1811ar1   B CUACU A BINDING SITE.H - 181

Clusters included in this Subclass
CLUSTER: HA.3.40
CLUSTER: HA.4.27
CLUSTER: HA.5.34