ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.1.5

Subclass Accession number: 7870
Subclass: 4.1.5

PSSM

Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 14

Average sequence ID (%) : 12.1 +/- 16.2
Average RMSD (Å) : 0.357 +/- 0.140

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XpXXXphX
(φψ)-conformation:	bbaaalbb

Pattern:	x	x	[adgpq]	[adekrst]	x	[ADGKNQR]	[filvy]	x
Conservation:	-0.328	-0.129	-0.035	-0.022	-1.351	1.052	1.750	-0.936

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a1r_A_101	1a1r	A	102	109	TNVDQDLV	EETTTTEE	bbaaavbb
1a8d_*_293	1a8d	-	295	302	TNGKLNIY	EETTTTEE	bbaaalbb
1ad3_A_308	1ad3	A	308	315	WDQSSRYI	EETTTTEE	bbaaalxb
1ar1_B_181	1ar1	B	184	191	TIPAFAVK	EEGGGTEE	bbaaavbb
1arb_*_103	1arb	-	108	115	TYATSDFT	EETTTTEE	bbaaalbb
1h8d_H_60	1h8d	H	60	67	LYPPWDKN	EEGGGTEE	bbaaalxb
1i7q_B_155	1i7q	B	160	167	RDDRRRVC	EETTTTEE	bbaaalbb
1itk_A_581	1itk	A	581	588	VDGVRNYI	EETTTTEE	bbaaalbb
1ji1_A_555	1ji1	A	561	568	TDDTNKIY	EETTTTEE	bbaaalbb
1ky9_A_129	1ky9	A	130	137	KDPRSDIA	EETTTTEE	bbaaalbb
1lc0_A_183	1lc0	A	191	198	ERKEDQYM	EEGGGTEE	bbaaalbb
1m56_B_217	1m56	B	220	227	TVPAFGVK	EEGGGTEE	bbaaavbb
1tfr_*_195	1tfr	-	196	203	GDKKDNVA	EEGGGTEE	ebaaavxb
2occ_B_161	2occ	B	164	171	AVPSLGLK	EEGGGTEE	bbaaavbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ar1_B_181	1ar1	B	CUCOPPER (II) ION	H - 181
1ar1_B_181	1ar1	B	CUCOPPER (II) ION	A - 182
1ar1_B_181	1ar1	B	MGMAGNESIUM ION	A - 182
1ar1_B_181	1ar1	B	MGMAGNESIUM ION	D - 193
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	G - 129
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	K - 130
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	D - 131
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	R - 133
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	S - 134
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	I - 136
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	A - 137
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	L - 138
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	I - 139
1ky9_A_129	1ky9	A	MSESELENOMETHIONINE	Q - 140
1m56_B_217	1m56	B	CUCOPPER (II) ION	H - 217
1m56_B_217	1m56	B	CUCOPPER (II) ION	S - 218
1m56_B_217	1m56	B	MGMAGNESIUM ION	S - 218
1m56_B_217	1m56	B	MGMAGNESIUM ION	D - 229
1tfr_*_195	1tfr	*	MGMAGNESIUM ION	D - 200
2occ_B_161	2occ	B	CUCOPPER (II) ION	H - 161
2occ_B_161	2occ	B	CUCOPPER (II) ION	S - 162
2occ_B_161	2occ	B	MGMAGNESIUM ION	S - 162
2occ_B_161	2occ	B	MGMAGNESIUM ION	D - 173

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1a1r_A_101	1a1r	A	AC1ACTIVE SITE, MOLECULE A.	D - 107
1ar1_B_181	1ar1	B	CUACU A BINDING SITE.	H - 181

Clusters included in this Subclass

CLUSTER: HA.3.27