Information on SUBCLASS 4.1.9 |
Subclass Accession number: 7874
Subclass: 4.1.9 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 14.3 +/- 16.3 Average RMSD (Å) : 0.857 +/- 0.310 Consensus geometry
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Consensus Sequence: | XpXXpXph |
(φψ)-conformation: | bbaaalbb |
Pattern: | x | [flv] | x | [CFLV] | x | x | [DENS] | x | x | [knrst] | [degrs] | [AERT] | [acfly] | [itvy] | [AGL] | [IMTV] | [ADGK] |
Conservation: | -0.753 | 0.101 | -1.045 | 0.892 | -0.424 | -0.477 | 2.494 | -1.448 | -0.102 | -0.242 | -0.862 | 0.326 | -0.762 | -0.251 | 0.373 | 1.696 | 0.483 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1fot_A_100 | 1fot | A | 100 | 116 | RVHLIRSRHNGRYYAMK | EEEEEEETTT--EEEEE | xbbxbbxaaalxbbbxx |
1g8k_B_104 | 1g8k | B | 104 | 120 | RVLLRYDAASDALTAVG | EEEEEEETTTTEEEEEE | xxxbbbbaaavxbbxab |
1h1w_A_95 | 1h1w | A | 95 | 111 | TVVLARELATSREYAIK | EEEEEEETTT--EEEEE | bxbxbbxaaavxbbxxx |
1hs6_A_16 | 1hs6 | A | 22 | 38 | HLRCSVDFTRRTLTGTA | EEEEEEETTTTEEEEEE | bbbbbxxaaalbbbebb |
1ia8_A_22 | 1ia8 | A | 22 | 38 | EVQLAVNRVTEEAVAVK | EEEEEEETTT--EEEEE | bbbxbbxaaavxbbbbx |
1jof_A_15 | 1jof | A | 16 | 32 | IFTVQFDDEKLTCKLIK | EEEEEEETTTTEEEEEE | bbbbbbxaaalbbbxab |
1nuw_A_1180 | 1nuw | A | 1181 | 1197 | VNCFMLDPAIGEFILVD | EEEEEEETTTTEEEEEE | bbbbxxxaaavbxbpab |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1h1w_A_95 | 1h1w | A | ATPADENOSINE-5'-TRIPHOSPHATE | T - 95 |
1h1w_A_95 | 1h1w | A | ATPADENOSINE-5'-TRIPHOSPHATE | V - 96 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | L - 102 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | A - 103 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | T - 104 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | S - 105 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | R - 106 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | E - 107 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | Y - 108 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | A - 109 |
1h1w_A_95 | 1h1w | A | ATPADENOSINE-5'-TRIPHOSPHATE | A - 109 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | K - 111 |
1h1w_A_95 | 1h1w | A | ATPADENOSINE-5'-TRIPHOSPHATE | K - 111 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | I - 112 |
1h1w_A_95 | 1h1w | A | GOLGLYCEROL | L - 113 |
1hs6_A_16 | 1hs6 | A | YBYTTERBIUM (III) ION | R - 31 |
1hs6_A_16 | 1hs6 | A | YBYTTERBIUM (III) ION | T - 33 |
1hs6_A_16 | 1hs6 | A | YBYTTERBIUM (III) ION | T - 35 |
1jof_A_15 | 1jof | A | MSESELENOMETHIONINE | A - 15 |
1jof_A_15 | 1jof | A | MSESELENOMETHIONINE | I - 16 |
1jof_A_15 | 1jof | A | MSESELENOMETHIONINE | F - 17 |
1jof_A_15 | 1jof | A | MSESELENOMETHIONINE | T - 18 |
1jof_A_15 | 1jof | A | MSESELENOMETHIONINE | V - 19 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h1w_A_95 | 1h1w | A | AC7GOL BINDING SITE FOR CHAIN A | S - 105 |
1h1w_A_95 | 1h1w | A | AC5GOL BINDING SITE FOR CHAIN A | R - 106 |
1h1w_A_95 | 1h1w | A | AC5GOL BINDING SITE FOR CHAIN A | E - 107 |
1h1w_A_95 | 1h1w | A | AC5GOL BINDING SITE FOR CHAIN A | Y - 108 |
1h1w_A_95 | 1h1w | A | BC6ATP BINDING SITE FOR CHAIN A | A - 109 |
1h1w_A_95 | 1h1w | A | AC8GOL BINDING SITE FOR CHAIN A | K - 111 |
Clusters included in this Subclass |
CLUSTER: HA.4.34 |