Information on SUBCLASS 4.18.1 |
Subclass Accession number: 674
Subclass: 4.18.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005524 (>75 %) GO:0016772 (>75 %) GO:0030554 (>75 %) |
Number of loops: 5 Average sequence ID (%) : 25.0 +/- 23.0 Average RMSD (Å) : 0.820 +/- 0.335 Consensus geometry
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Consensus Sequence: | hXcXGEXh |
(φψ)-conformation: | bbeagabb |
Pattern: | x | [EFH] | [APSV] | [eprs] | [DGS] | [dsv] | [G] | x | [fqr] | [LVW] | [IKLT] | [hpt] |
Conservation: | -1.000 | 0.147 | -0.360 | -0.850 | 0.384 | -0.691 | 2.727 | 0.347 | -0.697 | -0.068 | -0.540 | -0.401 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1f0x_A_107 | 1f0x | A | 107 | 118 | LHVLGKGEQVLA | EEEETTTTEEEE | bbxxeagabbbb |
1lvm_B_132 | 1lvm | B | 132 | 142 | .FPSSDGIFWKH | .EEETTTTEEEE | .bxbeavabbxb |
1oj4_A_151 | 1oj4 | A | 151 | 162 | AFAEGVGEILTP | EEEETTTTEEEE | bxbbeagaxbbx |
1pgu_A_209 | 1pgu | A | 213 | 224 | EFSPDSGEFVIT | EE-STT--EEEE | bxxxeavabbbb |
1uek_A_134 | 1uek | A | 135 | 146 | AEARGVGERLKP | EEEETTTTEEEE | bbbbeagaxbbp |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1oj4_A_151 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | G - 155 |
1oj4_A_151 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | V - 156 |
1oj4_A_151 | 1oj4 | A | CDM4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL | G - 157 |
1pgu_A_209 | 1pgu | A | MSESELENOMETHIONINE | V - 212 |
1pgu_A_209 | 1pgu | A | MSESELENOMETHIONINE | F - 214 |
1pgu_A_209 | 1pgu | A | MSESELENOMETHIONINE | V - 222 |
1pgu_A_209 | 1pgu | A | MSESELENOMETHIONINE | T - 224 |
Clusters included in this Subclass |
CLUSTER: HA.3.115 |
CLUSTER: HA.5.131 |