Information on SUBCLASS 4.2.3 |
Subclass Accession number: 7887
Subclass: 4.2.3 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 5 Average sequence ID (%) : 27.9 +/- 25.0 Average RMSD (Å) : 0.560 +/- 0.152 Consensus geometry
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Consensus Sequence: | XTXXGpXX |
(φψ)-conformation: | bbaagpbb |
Pattern: | [akr] | [AVY] | [GIV] | [LTY] | [FKV] | [T] | [ADR] | x | [GR] | [DKNR] | x | [dk] | [KTV] | [ACKT] |
Conservation: | -0.451 | -0.006 | -0.389 | 0.226 | -0.585 | 2.835 | -0.376 | -1.071 | 1.343 | 0.195 | -0.914 | -0.404 | -0.131 | -0.273 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1i1q_A_452 | 1i1q | A | 452 | 465 | AVGYFTAHGDLDTC | EEEEEETTS-EEEE | bbebbbaagxbbbb |
1i7q_A_452 | 1i7q | A | 452 | 465 | RVGYFTAVRNLDTC | EEEEEETTS-EEEE | bbebbbaavxbbbb |
1mi8_A_47 | 1mi8 | A | 56 | 69 | VYILKTRLGRTIKA | EEEEEETT--EEEE | bbxbbbaagxbbbb |
1mu2_A_452 | 1mu2 | A | 453 | 466 | KAGYVTDRGKDKVK | EEEEEETTS-EEEE | bbbbbbaavxbbbb |
1p1j_A_25 | 1p1j | A | 35 | 48 | AVVTKTASGRFDVT | EEEEE-TTS-EEEE | bbbbbxaavbxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | V - 453 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | G - 454 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | Y - 455 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | D - 463 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | T - 464 |
1i1q_A_452 | 1i1q | A | TRPTRYPTOPHAN | C - 465 |
Clusters included in this Subclass |
CLUSTER: HA.3.168 |
CLUSTER: HA.5.75 |