Logo
Information on SUBCLASS 4.2.3
Subclass Accession number: 7887
Subclass: 4.2.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 27.9 +/- 25.0
Average RMSD (Å) : 0.560 +/- 0.152

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XTXXGpXX
(φψ)-conformation: bbaagpbb
Pattern: [akr][AVY][GIV][LTY][FKV][T][ADR]x[GR][DKNR]x[dk][KTV][ACKT]
Conservation:-0.451-0.006-0.3890.226-0.5852.835-0.376-1.0711.3430.195-0.914-0.404-0.131-0.273
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1i1q_A_4521i1q   A452465AVGYFTAHGDLDTCEEEEEETTS-EEEEbbebbbaagxbbbb
1i7q_A_4521i7q   A452465RVGYFTAVRNLDTCEEEEEETTS-EEEEbbebbbaavxbbbb
1mi8_A_471mi8   A5669VYILKTRLGRTIKAEEEEEETT--EEEEbbxbbbaagxbbbb
1mu2_A_4521mu2   A453466KAGYVTDRGKDKVKEEEEEETTS-EEEEbbbbbbaavxbbbb
1p1j_A_251p1j   A3548AVVTKTASGRFDVTEEEEE-TTS-EEEEbbbbbxaavbxxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i1q_A_4521i1q   A     TRPTRYPTOPHAN V - 453
1i1q_A_4521i1q   A     TRPTRYPTOPHAN G - 454
1i1q_A_4521i1q   A     TRPTRYPTOPHAN Y - 455
1i1q_A_4521i1q   A     TRPTRYPTOPHAN D - 463
1i1q_A_4521i1q   A     TRPTRYPTOPHAN T - 464
1i1q_A_4521i1q   A     TRPTRYPTOPHAN C - 465

Clusters included in this Subclass
CLUSTER: HA.3.168
CLUSTER: HA.5.75