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Information on SUBCLASS 4.2.4
Subclass Accession number: 6268
Subclass: 4.2.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 3

Average sequence ID (%) : 12.5 +/- 16.2
Average RMSD (Å) : 1.033 +/- 0.404

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXhcppXX
(φψ)-conformation: bbabaabb
Pattern: xx[AQ][IP][DN][DQS][NQ][FHL][AKS][FLY][AGN][FIY][AEQ][AG]x[AY]
Conservation:-1.000-0.519-0.196-0.9972.067-0.3851.350-1.057-0.6530.422-0.7880.422-0.5191.305-1.1910.738
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0t_P_3711a0t   P382397IQAINQNFALAYEGSYEEESSSSEEEEEEEEEbbxabaabbbbbbbbb
1kmo_A_3321kmo   A345360QFQPDSQHKFNIQGFYEE-SSTTEEEEEEEEEbbbabaabbbbbbbbb
1l8f_A_611l8f   A6175.WAINDNLSYGFAATA.EESSSSEEEEEEEEE.bxabaabbbbbbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE R - 336
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE A - 340
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE S - 341
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE L - 342
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE G - 343
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE Y - 344
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 354
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE I - 356
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE Q - 357
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE G - 358
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE F - 359
1kmo_A_3321kmo   A     LDALAURYL DIMETHYLAMINE-N-OXIDE Y - 360

Clusters included in this Subclass
CLUSTER: HA.4.255