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Information on SUBCLASS 4.2.8
Subclass Accession number: 648
Subclass: 4.2.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 56924 (>50 %)  56935 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 17.8 +/- 16.9
Average RMSD (Å) : 0.667 +/- 0.058

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXpGhXX
(φψ)-conformation: bbaagpbb
Pattern: [ANT][IL]xx[NTV][FGT][EG]x[AD][ENQ][G][LV][TV]xx
Conservation:-0.4750.856-0.713-0.554-0.633-1.1090.241-0.3160.1130.2392.9350.5190.481-0.792-0.792
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1fep_A_2821fep   A290304ALTWNGGWDNGVTTSEEEEEEE-TTS-EEEbbbbbbbbaagxbbb
1mdb_A_3251mdb   A325339TLQQVFGMAEGLVNYEEEEEEE-TTS-EEExxbxbbbbaaIpbbb
3prn_*_253prn   -3448NIVGTTETDQGVTFGEEEEEE--TTS-EEEbbbbbbxbaavxbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fep_A_2821fep   A     MSESELENOMETHIONINE W - 306
1fep_A_2821fep   A     MSESELENOMETHIONINE V - 307
1fep_A_2821fep   A     MSESELENOMETHIONINE Q - 308
1fep_A_2821fep   A     MSESELENOMETHIONINE Y - 309
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE Q - 328
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE V - 329
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID V - 329
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE F - 330
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID F - 330
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE G - 331
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID G - 331
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE M - 332
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID M - 332
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE A - 333
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID A - 333
1mdb_A_3251mdb   A     AMPADENOSINE MONOPHOSPHATE E - 334
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID E - 334
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID G - 335
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID L - 336
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID V - 337
1mdb_A_3251mdb   A     DBH2,3-DIHYDROXY-BENZOIC ACID Y - 339
3prn_*_253prn   *     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE T - 25
3prn_*_253prn   *     MGMAGNESIUM ION I - 26
3prn_*_253prn   *     MGMAGNESIUM ION I - 27
3prn_*_253prn   *     C8E(HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE I - 27
3prn_*_253prn   *     MGMAGNESIUM ION S - 28
3prn_*_253prn   *     MGMAGNESIUM ION S - 29
3prn_*_253prn   *     MGMAGNESIUM ION D - 56

Clusters included in this Subclass
CLUSTER: HA.5.179