Information on SUBCLASS 4.20.1 |
Subclass Accession number: 6307
Subclass: 4.20.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 7 Average sequence ID (%) : 41.7 +/- 34.4 Average RMSD (Å) : 0.414 +/- 0.334 Consensus geometry
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Consensus Sequence: | XpppcXXp |
(φψ)-conformation: | bbaabebb |
Pattern: | [IVY] | [LY] | [CIV] | [afkl] | [dq] | [NSTY] | [gy] | [gn] | [gly] | [FRY] | [NT] | [FL] |
Conservation: | 0.288 | 1.482 | 0.613 | -1.449 | -0.790 | -0.653 | -0.681 | 0.734 | -1.552 | 0.210 | 1.142 | 0.659 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0q_L_85 | 1a0q | L | 86 | 97 | YYCLQYYNLRTF | EEEEE-SSS-EE | bbxbxaabebbx |
1c5d_A_85 | 1c5d | A | 86 | 97 | YYCLQYGNLYTF | EEEEE-SSS-EE | bbbbxaabebbx |
1hxn_*_297 | 1hxn | - | 298 | 309 | VYVFLTKGGYTL | EEEEE-SSS-EE | bbbbxaabexbx |
1il1_B_90 | 1il1 | B | 92 | 103 | YYCQQYYHYRTF | EEEEE-SSS-EE | bbbbbaabebbb |
1q7f_A_971 | 1q7f | A | 971 | 982 | ILIADNHNNFNL | EEEEE-SSS-EE | xbbbbaabexbb |
1q9r_A_84 | 1q9r | A | 86 | 97 | YYCKQSYNLRTF | EEEEE-SSS-EE | bbxbxaabebbx |
2ck0_L_85 | 2ck0 | L | 86 | 97 | YYCKQSYNLYTF | EEEEE-SSS-EE | bbbbbaabebbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a0q_L_85 | 1a0q | L | HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE | L - 89 |
1a0q_L_85 | 1a0q | L | HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE | Y - 91 |
1q9r_A_84 | 1q9r | A | MGMAGNESIUM ION | Y - 86 |
1q9r_A_84 | 1q9r | A | MGMAGNESIUM ION | C - 88 |
1q9r_A_84 | 1q9r | A | KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID | S - 91 |
1q9r_A_84 | 1q9r | A | KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID | Y - 92 |
1q9r_A_84 | 1q9r | A | KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID | N - 93 |
1q9r_A_84 | 1q9r | A | KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID | L - 94 |
1q9r_A_84 | 1q9r | A | KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID | R - 95 |
1q9r_A_84 | 1q9r | A | MGMAGNESIUM ION | R - 95 |
1q9r_A_84 | 1q9r | A | MGMAGNESIUM ION | T - 96 |
1q9r_A_84 | 1q9r | A | MGMAGNESIUM ION | F - 97 |
Clusters included in this Subclass |
CLUSTER: HA.5.89 |