Logo
Information on SUBCLASS 4.20.1
Subclass Accession number: 6307
Subclass: 4.20.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 7

Average sequence ID (%) : 41.7 +/- 34.4
Average RMSD (Å) : 0.414 +/- 0.334

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XpppcXXp
(φψ)-conformation: bbaabebb
Pattern: [IVY][LY][CIV][afkl][dq][NSTY][gy][gn][gly][FRY][NT][FL]
Conservation:0.2881.4820.613-1.449-0.790-0.653-0.6810.734-1.5520.2101.1420.659
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0q_L_851a0q   L8697YYCLQYYNLRTFEEEEE-SSS-EEbbxbxaabebbx
1c5d_A_851c5d   A8697YYCLQYGNLYTFEEEEE-SSS-EEbbbbxaabebbx
1hxn_*_2971hxn   -298309VYVFLTKGGYTLEEEEE-SSS-EEbbbbxaabexbx
1il1_B_901il1   B92103YYCQQYYHYRTFEEEEE-SSS-EEbbbbbaabebbb
1q7f_A_9711q7f   A971982ILIADNHNNFNLEEEEE-SSS-EExbbbbaabexbb
1q9r_A_841q9r   A8697YYCKQSYNLRTFEEEEE-SSS-EEbbxbxaabebbx
2ck0_L_852ck0   L8697YYCKQSYNLYTFEEEEE-SSS-EEbbbbbaabebbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a0q_L_851a0q   L     HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE L - 89
1a0q_L_851a0q   L     HEPPHENYL[1-(N-SUCCINYLAMINO)PENTYL]PHOSPHONATE Y - 91
1q9r_A_841q9r   A     MGMAGNESIUM ION Y - 86
1q9r_A_841q9r   A     MGMAGNESIUM ION C - 88
1q9r_A_841q9r   A     KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID S - 91
1q9r_A_841q9r   A     KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID Y - 92
1q9r_A_841q9r   A     KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID N - 93
1q9r_A_841q9r   A     KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID L - 94
1q9r_A_841q9r   A     KDO3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID R - 95
1q9r_A_841q9r   A     MGMAGNESIUM ION R - 95
1q9r_A_841q9r   A     MGMAGNESIUM ION T - 96
1q9r_A_841q9r   A     MGMAGNESIUM ION F - 97

Clusters included in this Subclass
CLUSTER: HA.5.89