Information on SUBCLASS 4.3.3 |
Subclass Accession number: 651
Subclass: 4.3.3 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 11.4 +/- 13.2 Average RMSD (Å) : 0.767 +/- 0.432 Consensus geometry
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Consensus Sequence: | XXhppchX |
(φψ)-conformation: | bpabaabb |
Pattern: | x | x | [ptv] | [hkpq] | [AILV] | [DNS] | [DEHPS] | [DKN] | [lvw] | [ctvy] | [AGLTV] | [aiy] | x | [AQST] | [ltvw] | [ael] | x |
Conservation: | -0.803 | -0.923 | 0.359 | -0.495 | 1.314 | 1.920 | 0.338 | 1.786 | -0.660 | -0.256 | -0.682 | 0.045 | -1.648 | 0.833 | 0.147 | -0.316 | -0.957 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a0t_P_335 | 1a0t | P | 343 | 359 | GTTPLSENWSVAPAMLA | EEEESSSSEEEEEEEEE | bbbxabaabbbbwbbbb |
1a7t_A_11 | 1a7t | A | 12 | 28 | SITQLSDKVYTYVSLAE | EEEE-SSSEEEEEEEEE | bbbxabaabbbbbbbbx |
1hxx_A_40 | 1hxx | A | 47 | 63 | GETQINSDLTGYGQWEY | EEEESSSSEEEEEEEEE | bbbxabaabbbbbbbbb |
1nh8_A_238 | 1nh8 | A | 239 | 255 | IAPLADPDWVAIRALVP | EEE-SSTTEEEEEEEEE | bbxxaxaabbbbbbxbp |
1q5y_A_82 | 1q5y | A | 86 | 102 | LHVHINHDDCLEIAVLK | EEEE-SSSEEEEEEEEE | xbbxabaabbbbbbxbb |
3lkf_A_8 | 3lkf | A | 8 | 24 | SVKKVDDKVTLYKTTAT | EEEE-SSSEEEEEEEEE | bbbxabaabbbbbbbbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1a7t_A_11 | 1a7t | A | MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID | I - 29 |
1nh8_A_238 | 1nh8 | A | HISHISTIDINE | L - 242 |
1nh8_A_238 | 1nh8 | A | HISHISTIDINE | A - 249 |
1nh8_A_238 | 1nh8 | A | HISHISTIDINE | I - 250 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | H - 87 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | V - 88 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | H - 89 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | I - 90 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | N - 91 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | D - 94 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | C - 95 |
1q5y_A_82 | 1q5y | A | NINICKEL (II) ION | L - 96 |
Clusters included in this Subclass |
CLUSTER: HA.3.106 |
CLUSTER: HA.4.88 |