Logo
Information on SUBCLASS 4.3.3
Subclass Accession number: 651
Subclass: 4.3.3 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 11.4 +/- 13.2
Average RMSD (Å) : 0.767 +/- 0.432

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXhppchX
(φψ)-conformation: bpabaabb
Pattern: xx[ptv][hkpq][AILV][DNS][DEHPS][DKN][lvw][ctvy][AGLTV][aiy]x[AQST][ltvw][ael]x
Conservation:-0.803-0.9230.359-0.4951.3141.9200.3381.786-0.660-0.256-0.6820.045-1.6480.8330.147-0.316-0.957
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0t_P_3351a0t   P343359GTTPLSENWSVAPAMLAEEEESSSSEEEEEEEEEbbbxabaabbbbwbbbb
1a7t_A_111a7t   A1228SITQLSDKVYTYVSLAEEEEE-SSSEEEEEEEEEbbbxabaabbbbbbbbx
1hxx_A_401hxx   A4763GETQINSDLTGYGQWEYEEEESSSSEEEEEEEEEbbbxabaabbbbbbbbb
1nh8_A_2381nh8   A239255IAPLADPDWVAIRALVPEEE-SSTTEEEEEEEEEbbxxaxaabbbbbbxbp
1q5y_A_821q5y   A86102LHVHINHDDCLEIAVLKEEEE-SSSEEEEEEEEExbbxabaabbbbbbxbb
3lkf_A_83lkf   A824SVKKVDDKVTLYKTTATEEEE-SSSEEEEEEEEEbbbxabaabbbbbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a7t_A_111a7t   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID I - 29
1nh8_A_2381nh8   A     HISHISTIDINE L - 242
1nh8_A_2381nh8   A     HISHISTIDINE A - 249
1nh8_A_2381nh8   A     HISHISTIDINE I - 250
1q5y_A_821q5y   A     NINICKEL (II) ION H - 87
1q5y_A_821q5y   A     NINICKEL (II) ION V - 88
1q5y_A_821q5y   A     NINICKEL (II) ION H - 89
1q5y_A_821q5y   A     NINICKEL (II) ION I - 90
1q5y_A_821q5y   A     NINICKEL (II) ION N - 91
1q5y_A_821q5y   A     NINICKEL (II) ION D - 94
1q5y_A_821q5y   A     NINICKEL (II) ION C - 95
1q5y_A_821q5y   A     NINICKEL (II) ION L - 96

Clusters included in this Subclass
CLUSTER: HA.3.106
CLUSTER: HA.4.88