Information on SUBCLASS 4.7.1 |
Subclass Accession number: 6283
Subclass: 4.7.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 20 Average sequence ID (%) : 18.3 +/- 20.0 Average RMSD (Å) : 0.340 +/- 0.173 Consensus geometry
|
Consensus Sequence: | XhGXXXXX |
(φψ)-conformation: | bbeaalpb |
Pattern: | x | x | [fgilvy] | [FG] | x | x | [egknq] | x | x | x |
Conservation: | -1.000 | -0.387 | -0.332 | 2.420 | -0.466 | -0.422 | 0.151 | -0.519 | -0.444 | -1.000 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
153l_*_90 | 153l | - | 90 | 97 | .GFGLMQVD. | .EETTTTEE. | .xbeaalxx. |
1b63_A_120 | 1b63 | A | 124 | 133 | YAEGRDMNVT | EEETTTTEEE | bbbeaalxbb |
1b9o_A_48 | 1b9o | A | 48 | 56 | TEYGLFQIS. | EEETTTTEE. | bbbeaalxx. |
1chk_A_44 | 1chk | A | 44 | 52 | YTGGIIGFC. | EEETTTTEE. | xbbeaavxb. |
1ejf_A_35 | 1ejf | A | 40 | 49 | CLGGSDNFKH | EEETTTTEEE | bbbeaavxxb |
1ekf_A_224 | 1ekf | A | 227 | 236 | WLYGPDHQLT | EEETTTTEEE | xbbeaalxxa |
1f6w_A_16 | 1f6w | A | 18 | 27 | KKLGLLGDSV | EE-SSSS-EE | bpbeaagxbb |
1fmj_A_35 | 1fmj | A | 36 | 45 | VKLGPKGYMV | EEETTTTEEE | bxbeaavxxb |
1gu6_A_217 | 1gu6 | A | 217 | 226 | YFDGKNKAVK | EEETTTTEEE | bxbeaalxxb |
1hhl_*_51 | 1hhl | - | 51 | 59 | TDYGVLQIN. | EEETTTTEE. | bbbeaalxx. |
1jsf_*_51 | 1jsf | - | 52 | 60 | TDYGIFQIN. | EEETTTTEE. | bbbeaalxx. |
1k8w_A_280 | 1k8w | A | 283 | 292 | VTEGENGKFI | EEETTTTEEE | bbbeaalxxa |
1miq_A_21 | 1miq | A | 21 | 28 | .EVGDNHQK. | .EETTTTEE. | .bbeaavxx. |
1qgi_A_60 | 1qgi | A | 60 | 67 | .TIGLFGAT. | .EETTTTEE. | .xbeaavxb. |
1qqy_A_53 | 1qqy | A | 53 | 60 | .DYGIFQLN. | .EETTTTEE. | .bbeaalxx. |
1ri6_A_300 | 1ri6 | A | 305 | 314 | EIVGEQGLLH | EEETTTTEEE | xxbeaavxbb |
1uhv_A_113 | 1uhv | A | 113 | 120 | .TVFYWEGN. | .EETTTTEE. | .bbeaalxp. |
2eql_*_52 | 2eql | - | 52 | 60 | SDYGLFQLN. | EEETTTTEE. | bxbeaalxx. |
2mcm_*_71 | 2mcm | - | 74 | 83 | AVVGADGTPW | EEETTTTEEE | xbbeaavxwa |
3lzt_*_51 | 3lzt | - | 51 | 59 | TDYGILQIN. | EEETTTTEE. | bbbeaalxx. |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1ekf_A_224 | 1ekf | A | PLPPYRIDOXAL-5'-PHOSPHATE | E - 237 |
1gu6_A_217 | 1gu6 | A | CACALCIUM ION | Y - 217 |
1gu6_A_217 | 1gu6 | A | CACALCIUM ION | F - 218 |
1gu6_A_217 | 1gu6 | A | HECHEME C | F - 218 |
1gu6_A_217 | 1gu6 | A | CACALCIUM ION | V - 225 |
1gu6_A_217 | 1gu6 | A | HECHEME C | V - 225 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | T - 60 |
1qgi_A_60 | 1qgi | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 60 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | F - 64 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | G - 65 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | A - 66 |
1qgi_A_60 | 1qgi | A | GCSD-GLUCOSAMINE | T - 67 |
1uhv_A_113 | 1uhv | A | DFX1,2-DEOXY-2-FLUORO-XYLOPYRANOSE | F - 115 |
2mcm_*_71 | 2mcm | * | CACALCIUM ION | W - 83 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | D - 52 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | L - 56 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | Q - 57 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | I - 58 |
3lzt_*_51 | 3lzt | * | ACTACETATE ION | N - 59 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gu6_A_217 | 1gu6 | A | HA1HEC BINDING SITE FOR CHAIN A | F - 218 |
Clusters included in this Subclass |
CLUSTER: HA.4.40 |
CLUSTER: HA.5.105 |
CLUSTER: HA.5.39 |