ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.9.1

Subclass Accession number: 6289
Subclass: 4.9.1

PSSM

Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 18

Average sequence ID (%) : 23.6 +/- 23.0
Average RMSD (Å) : 0.517 +/- 0.309

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XpXcpGXh
(φψ)-conformation:	bbagagbb

Pattern:	x	x	[dkpqrst]	[adgkns]	[gkn]	[cdeny]	[gw]	[adgnst]	[afilmpy]	[dehqst]	[acfiklt]
Conservation:	-1.000	-1.090	-0.379	-0.553	0.853	0.054	2.370	-0.121	-0.192	0.040	-0.981

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1c0a_A_436	1c0a	A	436	446	FEDDGEGGLTA	EEE-SSS-EEE	bbxavavbbbx
1fv1_B_148	1fv1	B	148	157	.IQNGDWTFQT	.EE-SSS-EEE	.bxavavbbbb
1hdm_B_142	1hdm	B	142	151	.QPNGDWTYQT	.EE-SSS-EEE	.xxavavbbbb
1hpg_A_117	1hpg	A	117	127	TVDLYNGSTQD	EEE-SSS-EEE	bbxalavbbbx
1jhl_H_92	1jhl	H	97	107	TRDDNYGAMDY	EEE-SSSSEEE	bxxagagxbab
1k5n_A_234	1k5n	A	234	243	.RPAGDRTFQK	.EE-SSS-EEE	.bxavagxbbb
1l0q_A_335	1l0q	A	337	346	KWDFGDGSSS.	EEE-SSS-EE.	bxbavavbbb.
1l1d_A_435	1l1d	A	435	445	KYDSGCGWPSF	EE--SSSS-EE	xbxavagbpbb
1lk2_A_234	1lk2	A	234	243	.RPAGDGTFQK	.EE-SSS-EEE	.bxavavbbbb
1lml_*_131	1lml	-	131	141	HVKDHAGAIVT	EEE-SSS-EEE	bbxavavbbbx
1mhc_A_234	1mhc	A	234	243	.RPSGDGTFQK	.EE-SSS-EEE	.bxagagbbbb
1n7v_A_355	1n7v	A	358	368	YKTDGYGGATC	EEE-SSSEEEE	bbbavavxbbb
1omh_A_211	1omh	A	211	221	LRYGKDGNFDL	EEE-SSS-EEE	bbxavNgxbbx
1uvq_B_148	1uvq	B	148	157	.IRNGDWTFQI	.EE-SSS-EEE	.bxavavbbbb
2apr_*_241	2apr	-	241	250	.SDNGDGTYTI	.EE-SSS-EEE	.bxavavbbbb
2sga_*_117	2sga	-	117	127	RVYLYNGSYQD	EEE-SSS-EEE	bbxavavbbbx
3fru_A_225	3fru	A	228	238	TGPNGDGSFHA	EEE-SSS-EEE	bbxagagxbbb
7mdh_A_323	7mdh	A	328	338	CRSKGDGDYEL	EE--SSS--EE	bbbavagbbbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1k5n_A_234	1k5n	A	GOLGLYCEROL	F - 241
1l1d_A_435	1l1d	A	CACCACODYLATE ION	W - 442
1lk2_A_234	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	R - 234
1lk2_A_234	1lk2	A	MPD2-METHYL-2,4-PENTANEDIOL	Q - 242
1n7v_A_355	1n7v	A	ACTACETATE ION	A - 356
1n7v_A_355	1n7v	A	ACTACETATE ION	Y - 358
1omh_A_211	1omh	A	MSESELENOMETHIONINE	N - 218
1uvq_B_148	1uvq	B	GLYGLYCINE	R - 149
3fru_A_225	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 225
3fru_A_225	3fru	A	FUCFUCOSE	N - 225
3fru_A_225	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 241
3fru_A_225	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	L - 242
3fru_A_225	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 243
3fru_A_225	3fru	A	MANALPHA-D-MANNOSE	E - 243
3fru_A_225	3fru	A	NAGN-ACETYL-D-GLUCOSAMINE	V - 244
3fru_A_225	3fru	A	MANALPHA-D-MANNOSE	V - 244
3fru_A_225	3fru	A	MANALPHA-D-MANNOSE	K - 245

Clusters included in this Subclass

CLUSTER: HA.4.41

CLUSTER: HA.6.24