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Information on SUBCLASS 5.1.5
Subclass Accession number: 700
Subclass: 5.1.5 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 12.1 +/- 13.0
Average RMSD (Å) : 0.743 +/- 0.329

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXXXpGXXX
(φψ)-conformation: bbpaagpbb
Pattern: x[acfgikltv]x[adgnst]x[adegknst][DGNRS]xxxx[acfgikltv]xx
Conservation:-0.521-0.519-0.3350.240-0.3640.4633.327-0.177-0.507-0.364-0.437-0.272-0.113-0.421
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1agj_A_1981agj   A198211GIFNSNGELVGIHSEEE-TTSEEEEEEExbbxaavxxabbxa
1bu6_O_2871bu6   O290303IACGPTGEVNYALEEEE-TTS-EEEEEEbbbxaavxpbbbbb
1d6a_A_2221d6a   A228241ELVDASGAKWIVLREEE-TTS-EEEEEExbbxaavxxbxbab
1eur_*_2211eur   -226239TIINAAGAFQAVSVEEE-TT--EEEEEEbbbxaavxxbbbxb
1fs7_A_2191fs7   A224237EWKDDKGVDKTAMVEEE-TT--EEEEEExbbxaavxxbbbbx
1g5h_A_2471g5h   A251264DCQDELGRKGSKLYEEE-TTS-EEEEEExbbbaavxxbbbbb
1ghe_A_1471ghe   A155168YCATPDGRLHPTAIEEE-TTS-EEEEEEabbxaavxxbxbbx
1gtm_A_351gtm   A4255PVEMDDGSVKVFTGEEE-TTS-EEEEEEwbxxaavbbbbbbb
1hrd_A_561hrd   A6376PWEDDNGKVHVNTGEEE-TTS-EEEEEEwbbxaavxxbbbbb
1i7d_A_2201i7d   A227240HIVTPADERFTAIWEEE-TT--EEEEEExxbxaavxbbbbxx
1ju3_A_61ju3   A1326MVPMRDGVRLAVDLEEE-TTS-EEEEEExbxxaavxbbxbbb
1juv_A_21juv   A1023PTKTVDGFNELAFGEEE-TTS-EEEEEExbbxaavxxbbxab
1kjo_A_41kjo   A922VGRGVLGDQKNINTEEE-TTS-EEEEEEbbbxaavxxbxbxb
1ofz_A_731ofz   A7992YCVNKDNILSEFVYEEE-TT-BEEEEEEbbbxaalbpbbbbb
1olz_A_3991olz   A406419RTQALDGTVYDVMFEEE-TTS-EEEEEExbbxaavxxbxxxb
1orv_A_3701orv   A374387IISNEEGYKHICHFEEE-TTS-EEEEEExbxxaavxxbxbxb
1q2b_A_131q2b   A1730QKCSSGGTCTQQTGEEE-TTS-EEEEEEbbbbaagbbbxbbb
1q8i_A_631q8i   A6982ALKDFHRQPVYGLYEEE-TTS-EEEEEEabbxaavxxbbxxb
1qau_A_1041qau   A109122TTFTGDGTPKTIRVEEE-TT--EEEEEEbbbxaavxwbxbbb
1sjy_A_741sjy   A8497LGRFPDGVLILRHVEEE-TTS-EEEEEEbbbxaavxxbbxbb
1usr_A_2031usr   A211224LRTTATGRIFFSTLEEE-TTS-EEEEEExbbxaavxxbxbxa
1uzx_A_451uzx   A5164VFTHSDGTPQLLLSEEE-TTS-EEEEEExxbxaavxwbxbxb
1v3e_A_3771v3e   A384397VDKGLNSIPKLKVWEEE-TT--EEEEEEbbbbaaUxxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bu6_O_2871bu6   O     GOLGLYCEROL E - 303
1fs7_A_2191fs7   A     CACALCIUM ION Y - 219
1fs7_A_2191fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 220
1fs7_A_2191fs7   A     CACALCIUM ION F - 220
1fs7_A_2191fs7   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 238
1fs7_A_2191fs7   A     CACALCIUM ION V - 238
1ghe_A_1471ghe   A     MSESELENOMETHIONINE A - 157
1ghe_A_1471ghe   A     MSESELENOMETHIONINE T - 158
1ghe_A_1471ghe   A     MSESELENOMETHIONINE P - 159
1ghe_A_1471ghe   A     MSESELENOMETHIONINE D - 160
1ghe_A_1471ghe   A     MSESELENOMETHIONINE G - 161
1ghe_A_1471ghe   A     MSESELENOMETHIONINE R - 162
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 5
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 6
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 7
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 8
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 21
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 22
1juv_A_21juv   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 23
1ofz_A_731ofz   A     FULBETA-L-FUCOSE I - 74
1ofz_A_731ofz   A     FULBETA-L-FUCOSE Q - 75
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE Q - 75
1ofz_A_731ofz   A     FULBETA-L-FUCOSE I - 76
1ofz_A_731ofz   A     FULBETA-L-FUCOSE R - 77
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE R - 77
1ofz_A_731ofz   A     FULBETA-L-FUCOSE Y - 79
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE Y - 79
1ofz_A_731ofz   A     FULBETA-L-FUCOSE E - 89
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE E - 89
1ofz_A_731ofz   A     FULBETA-L-FUCOSE V - 91
1ofz_A_731ofz   A     AFLALPHA-L-FUCOSE V - 91
1ofz_A_731ofz   A     FULBETA-L-FUCOSE Y - 92
1orv_A_3701orv   A     SULSULFATE ANION I - 374
1uzx_A_451uzx   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID F - 52
1uzx_A_451uzx   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID H - 54
1uzx_A_451uzx   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID S - 55
1uzx_A_451uzx   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID Q - 60
1uzx_A_451uzx   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID L - 62
1uzx_A_451uzx   A     MSESELENOMETHIONINE L - 63
1uzx_A_451uzx   A     MSESELENOMETHIONINE S - 64
1uzx_A_451uzx   A     MSESELENOMETHIONINE I - 65
1uzx_A_451uzx   A     MSESELENOMETHIONINE Y - 66
1uzx_A_451uzx   A     MSESELENOMETHIONINE I - 69
1v3e_A_3771v3e   A     ZMRZANAMIVIR M - 377
1v3e_A_3771v3e   A     NAGN-ACETYL-D-GLUCOSAMINE I - 391
1v3e_A_3771v3e   A     NAGN-ACETYL-D-GLUCOSAMINE P - 392
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1agj_A_1981agj   A SNACATALYTIC TETRAD OF SERINE PROTEASE.S - 211
1ofz_A_731ofz   A AC1FUL BINDING SITE FOR CHAIN AI - 76
1ofz_A_731ofz   A AC2AFL BINDING SITE FOR CHAIN AR - 77
1ofz_A_731ofz   A AC2AFL BINDING SITE FOR CHAIN AE - 89
1ofz_A_731ofz   A AC1FUL BINDING SITE FOR CHAIN AY - 92
1uzx_A_451uzx   A AC2MES BINDING SITE FOR CHAIN AH - 54

Clusters included in this Subclass
CLUSTER: HA.4.28
CLUSTER: HA.5.37
CLUSTER: HA.6.16