Information on SUBCLASS 5.1.8 |
Subclass Accession number: 6347
Subclass: 5.1.8 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 10 Average sequence ID (%) : 13.5 +/- 13.7 Average RMSD (Å) : 0.950 +/- 0.268 Consensus geometry
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Consensus Sequence: | hXXXcGpXX |
(φψ)-conformation: | bbpaagpbb |
Pattern: | x | x | x | [AGIKLV] | x | x | x | [dhn] | [DG] | [DKNPRST] | [cgkmtv] | x | x | [acgiltv] | [gktv] | x |
Conservation: | -0.206 | -0.909 | -0.034 | -0.209 | -0.664 | -0.477 | -0.163 | 0.655 | 3.470 | 0.320 | -0.321 | -0.273 | -0.651 | -0.194 | 0.076 | -0.422 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1bqb_A_2 | 1bqb | A | 4 | 19 | TGTGKGVLGDTKDINI | EEEEE-TTS-EEEEEE | bbbbxxaavxbbxbbb |
1fc6_A_399 | 1fc6 | A | 401 | 416 | QTVVDLSDGSGVAVTV | EEEEE-TTS-EEEEEE | bbbxxbaavxbbxbxa |
1ji6_A_399 | 1ji6 | A | 407 | 422 | TDVAAWPNGKVYLGVT | EEEEE-TTS-EEEEEE | bbbbxbaavxbbbbxa |
1nn6_A_30 | 1nn6 | A | 32 | 47 | YLEIVTSNGPSKFCGG | EEEEE-TTS-EEEEEE | bbbbxxaaGpbbbbbe |
1q16_A_450 | 1q16 | A | 457 | 472 | VKRLQLADGSTALVTT | EEEEE-TTS-EEEEEE | bbxbxxaagxbbxbbx |
1q2b_A_13 | 1q2b | A | 15 | 30 | TWQKCSSGGTCTQQTG | EEEEE-TTS-EEEEEE | xbbbbbaagbbbxbbb |
1qz1_A_73 | 1qz1 | A | 76 | 91 | KCVVTAEDGTQSEATV | EEEEE-TTS-EEEEEE | bbbbbxaavxbbbbbb |
1s3i_A_276 | 1s3i | A | 276 | 291 | GLILFGNDDRMLLVKN | EEEEE-TT--EEEEEE | ebxbbxaaUxbbbbab |
1s4v_A_162 | 1s4v | A | 167 | 182 | VGYGTTIDGTKYWTVK | EEEEE-TTS-EEEEEE | aebbbxaavxxbbbbx |
1ulz_A_206 | 1ulz | A | 210 | 225 | YQVLGDKHGNVIHLGE | EEEEE-TTS-EEEEEE | xxbbbxaavxbbbaeb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1s4v_A_162 | 1s4v | A | LYMDEOXY-METHYL-LYSINE | H - 162 |
1s4v_A_162 | 1s4v | A | LYMDEOXY-METHYL-LYSINE | G - 163 |
1s4v_A_162 | 1s4v | A | DVAD-VALINE | I - 173 |
Clusters included in this Subclass |
CLUSTER: HA.5.81 |
CLUSTER: HA.6.124 |