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Information on SUBCLASS 5.1.8
Subclass Accession number: 6347
Subclass: 5.1.8 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 13.5 +/- 13.7
Average RMSD (Å) : 0.950 +/- 0.268

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hXXXcGpXX
(φψ)-conformation: bbpaagpbb
Pattern: xxx[AGIKLV]xxx[dhn][DG][DKNPRST][cgkmtv]xx[acgiltv][gktv]x
Conservation:-0.206-0.909-0.034-0.209-0.664-0.477-0.1630.6553.4700.320-0.321-0.273-0.651-0.1940.076-0.422
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bqb_A_21bqb   A419TGTGKGVLGDTKDINIEEEEE-TTS-EEEEEEbbbbxxaavxbbxbbb
1fc6_A_3991fc6   A401416QTVVDLSDGSGVAVTVEEEEE-TTS-EEEEEEbbbxxbaavxbbxbxa
1ji6_A_3991ji6   A407422TDVAAWPNGKVYLGVTEEEEE-TTS-EEEEEEbbbbxbaavxbbbbxa
1nn6_A_301nn6   A3247YLEIVTSNGPSKFCGGEEEEE-TTS-EEEEEEbbbbxxaaGpbbbbbe
1q16_A_4501q16   A457472VKRLQLADGSTALVTTEEEEE-TTS-EEEEEEbbxbxxaagxbbxbbx
1q2b_A_131q2b   A1530TWQKCSSGGTCTQQTGEEEEE-TTS-EEEEEExbbbbbaagbbbxbbb
1qz1_A_731qz1   A7691KCVVTAEDGTQSEATVEEEEE-TTS-EEEEEEbbbbbxaavxbbbbbb
1s3i_A_2761s3i   A276291GLILFGNDDRMLLVKNEEEEE-TT--EEEEEEebxbbxaaUxbbbbab
1s4v_A_1621s4v   A167182VGYGTTIDGTKYWTVKEEEEE-TTS-EEEEEEaebbbxaavxxbbbbx
1ulz_A_2061ulz   A210225YQVLGDKHGNVIHLGEEEEEE-TTS-EEEEEExxbbbxaavxbbbaeb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1s4v_A_1621s4v   A     LYMDEOXY-METHYL-LYSINE H - 162
1s4v_A_1621s4v   A     LYMDEOXY-METHYL-LYSINE G - 163
1s4v_A_1621s4v   A     DVAD-VALINE I - 173

Clusters included in this Subclass
CLUSTER: HA.5.81
CLUSTER: HA.6.124