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Information on SUBCLASS 5.12.1
Subclass Accession number: 735
Subclass: 5.12.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 11

Average sequence ID (%) : 12.5 +/- 14.8
Average RMSD (Å) : 0.527 +/- 0.179

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XhpXppXXh
(φψ)-conformation: bbpaaalbb
Pattern: x[fitvwy][degkns][depqrs][DEKNQS][DEST]x[dhnqrw][iklv][ekqrsty]
Conservation:-0.906-0.5900.274-0.7061.1241.7090.280-1.3210.856-0.719
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1edh_A_1631edh   A164173TVNRDTGVISEE-TTT-EEEbbxaaavxxb
1f00_I_8031f00   I804813SVDASSGQVTEE-TTT-EEEbbxaaavxbb
1gqe_A_3221gqe   A325334SYVLDDSRIKEEEGGGTEEEbbxaaalbbb
1j3b_A_2991j3b   A299308VVNPESRRVQEE-TTT--EExbxaaalxxx
1jm1_A_1971jm1   A200209DYDSSTGDIYEE-TTT-EEEbbxaaavxbb
1jof_A_3261jof   A326335ITDDQEGWLEEE-SSS-EEEbbbaaavbbb
1lur_A_12471lur   A12491258FWSEKSGIELEE-TTT-EEEbbbaaavxbb
1o6s_B_511o6s   B5261IIERETGWLKEE-TTT-EEEbbxaaavxxb
1qqg_A_131qqg   A1928LRKPKSMHKREE-TTT--EEbbxaaalxxb
1ri6_A_2901ri6   A293302AAGQKSHHISEE-TTT-EEEbbbaaalbbb
1v74_A_6561v74   A658667YFNPNTMNVVEE-TTT-EEEbbbaaavxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gqe_A_3221gqe   A     MSESELENOMETHIONINE R - 324
1gqe_A_3221gqe   A     MSESELENOMETHIONINE Y - 326
1gqe_A_3221gqe   A     MSESELENOMETHIONINE L - 328
1gqe_A_3221gqe   A     MSESELENOMETHIONINE I - 333
1jof_A_3261jof   A     MSESELENOMETHIONINE I - 326
1jof_A_3261jof   A     MSESELENOMETHIONINE T - 327
1jof_A_3261jof   A     MSESELENOMETHIONINE D - 328
1jof_A_3261jof   A     MSESELENOMETHIONINE D - 329
1jof_A_3261jof   A     PINPIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) E - 331
1jof_A_3261jof   A     PINPIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID) W - 333
1jof_A_3261jof   A     MSESELENOMETHIONINE E - 335
1jof_A_3261jof   A     MSESELENOMETHIONINE I - 336
1jof_A_3261jof   A     MSESELENOMETHIONINE Y - 337
1jof_A_3261jof   A     MSESELENOMETHIONINE R - 338
1jof_A_3261jof   A     MSESELENOMETHIONINE W - 339
1lur_A_12471lur   A     MSESELENOMETHIONINE L - 1247
1lur_A_12471lur   A     MSESELENOMETHIONINE R - 1248
1v74_A_6561v74   A     1PEPENTAETHYLENE GLYCOL Y - 658
1v74_A_6561v74   A     1PEPENTAETHYLENE GLYCOL I - 669

Clusters included in this Subclass
CLUSTER: HA.5.52
CLUSTER: HA.6.24