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Information on SUBCLASS 5.2.2
Subclass Accession number: 706
Subclass: 5.2.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 39

Average sequence ID (%) : 14.7 +/- 15.6
Average RMSD (Å) : 0.749 +/- 0.327

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXXphXph
(φψ)-conformation: bbpaalabb
Pattern: xxx[adegnqrst]x[adekns][aegknqrs][adegknqrst]x[acfgikltv]xx
Conservation:-0.174-0.613-0.7690.038-0.3312.7451.043-0.203-0.218-0.271-0.218-1.030
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c22_A_2141c22   A214225IRTMKDGWTVKTEEE-TTSS-EEEbbxxaavapbbx
1cjx_A_1981cjx   A203214AMSAPDGMIRIPEEE-TTSS-EEExxbxaavaxbbx
1cru_A_4071cru   A410421VIASPDGNVLYVEEE-TTSS-EEEbbbxaavabbbb
1crz_A_2291crz   A229239.AFSPDGSKLAF.EE-TTSS-EEE.bxxaavabbbb
1crz_A_3781crz   A381392NLVSTDGRFKAREEE-TTS--EEEbbbxaavabbbx
1e4f_T_2751e4f   T277288QYRGLDGNTIKTEEE-TTSS-EEExbxxaavaxxbb
1eaf_*_4861eaf   -486497SSLAPSGQALIREEE-TTSS-EEEbbxxaavabbbx
1fjs_L_1151fjs   L115126YTLADNGKACIPEEE-TTSS-EEEbbxxaavaxbbx
1g6s_A_631g6s   A6475YTLSADRTRCEIEEE-TTS--EEEbbbxaavabbbb
1gl1_I_161gl1   I1728CRCGADGKSAACEEE-TTSS-EEEbbppaaUabbbb
1gmu_A_551gmu   A5566VLSNEEGTEFVQEEE-TTS--EEEbbbxaavabbbx
1h9s_A_1441h9s   A148159DVLLADGKTRLKEEEETTSS-EEExbxxaaUaxbbb
1ijq_A_6821ijq   A682691.LLARDMRSCL..EE-TTSS-EE..bxxaavaxbb.
1ivy_A_731ivy   A7384FLVQPDGVTLEYEEE-TTSS-EEEbbxbaavaxbbp
1jmx_B_2991jmx   B300311VAFDKKGDKLYLEEE-SSSS-EEExbbxaavabbxb
1k32_A_3441k32   A346357FIQDVSGTYVLKEEE-TTSSSEEEbbbxaavabbbx
1k3s_A_691k3s   A7081IGADADNTALVAEEE-TTS--EEEbbbxaalabxbb
1k5n_A_1211k5n   A124135IALNEDLSSWTAEEE-TTSS-EEEbbxxaavNbbbx
1kli_L_1181kli   L118129YSLLADGVSCTPEEE-TTSS-EEEbbxxaavaxbbp
1ko7_A_1761ko7   A178189EIREISKDELIGEEEESSSS-EEExbbbaalNbbbb
1l0q_A_2011l0q   A205216IAVNPEGTKAYVEEE-TTSSBEEEbbxxaavabbxb
1lwd_A_2911lwd   A294305VLVCPDGKTIEAEEE-TTSS-EEEbxbxaavaxbbx
1ly2_A_421ly2   A4455LCITKDKVDGTWEEE-SSSSS-EEbxbbaavabxbx
1mda_H_1291mda   H129140IGNCASSACLLFEEE-TTSS-EEEbbxxaavabbbb
1mzb_A_671mzb   A6879VRHNFDGGHAVFEEE-SSSSS-EEbbbbaagabxbb
1nzi_A_1481nzi   A148157.FLHDDMKNCG..EE-TTSS-EE..bxxaavabbb.
1oke_A_2381oke   A239250TFKNPHAKKQDVEEE-SSSS--EEbbbbaalabbbb
1orv_A_3101orv   A314325QWIRRAQNYSIIEEEETTSSEEEEbbbxaavabbbb
1pda_*_2561pda   -262273LVGAPDGSQIIREEE-TTSS-EEEbbbxaavabbxb
1pxf_A_851pxf   A8596CAETDDGSESVLEEE-TTS--EEEbxxxaalNxbbx
1qhd_A_1581qhd   A167178NRSQPAHDNLMGEE--TT-SS-EEabbbaalabxbe
1qhd_A_2361qhd   A237248VITSADGATTWYEEE-TTSS-EEEbbxxaavabbbb
1qi9_A_4461qi9   A446457VYPDDDGLKLIDEEE-TTSSSEEEbbxxaavabxbp
1ri6_A_2541ri6   A258269FSVSEDGSVLSKEEE-TTS--EEEbbbxaavabxbx
1s18_A_2491s18   A251262LSASPDFGDIAVEEE-TTSSSEEEbbbxaavabbbb
1tbg_A_3151tbg   A318329LGVTDDGMAVATEEE-TTSS-EEEbbbpaaUabbbb
1tol_A_361tol   A4455VVCTGDETQCYGEEE-TTSSSEEEbbbxaavabbbb
2hts_*_2162hts   -216226.HWSTSGESIVV.EE-TTSSSEEE.bxxaavabbbb
3pmg_A_2823pmg   A284295AAFDGDGDRNMIEEE-TTSS-EEEbbbxaavabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c22_A_2141c22   A     MF32-AMINO-4-TRIFLUOROMETHYLSULFANYL-BUTYRIC ACID W - 221
1cjx_A_1981cjx   A     FE2FE (II) ION P - 214
1cjx_A_1981cjx   A     ACTACETATE ION P - 214
1cjx_A_1981cjx   A     ACTACETATE ION N - 216
1cru_A_4071cru   A     PQQPYRROLOQUINOLINE QUINONE R - 408
1crz_A_2291crz   A     MSESELENOMETHIONINE S - 235
1crz_A_2291crz   A     MSESELENOMETHIONINE K - 236
1crz_A_2291crz   A     MSESELENOMETHIONINE L - 237
1crz_A_2291crz   A     MSESELENOMETHIONINE A - 238
1crz_A_2291crz   A     MSESELENOMETHIONINE F - 239
1crz_A_3781crz   A     MSESELENOMETHIONINE S - 378
1crz_A_3781crz   A     MSESELENOMETHIONINE L - 382
1crz_A_3781crz   A     MSESELENOMETHIONINE V - 383
1crz_A_3781crz   A     MSESELENOMETHIONINE S - 384
1crz_A_3781crz   A     MSESELENOMETHIONINE T - 385
1fjs_L_1151fjs   L     GOLGLYCEROL Y - 115
1fjs_L_1151fjs   L     GOLGLYCEROL P - 126
1g6s_A_631g6s   A     FMTFORMIC ACID S - 63
1g6s_A_631g6s   A     FMTFORMIC ACID Y - 64
1g6s_A_631g6s   A     FMTFORMIC ACID T - 65
1g6s_A_631g6s   A     FMTFORMIC ACID L - 66
1g6s_A_631g6s   A     FMTFORMIC ACID S - 67
1g6s_A_631g6s   A     FMTFORMIC ACID R - 72
1g6s_A_631g6s   A     FMTFORMIC ACID C - 73
1g6s_A_631g6s   A     FMTFORMIC ACID E - 74
1h9s_A_1441h9s   A     MOOMOLYBDATE ION Q - 144
1h9s_A_1441h9s   A     MOOMOLYBDATE ION A - 161
1h9s_A_1441h9s   A     MOOMOLYBDATE ION I - 162
1h9s_A_1441h9s   A     MOOMOLYBDATE ION T - 163
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE Q - 76
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE P - 77
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE D - 78
1ivy_A_731ivy   A     NAGN-ACETYL-D-GLUCOSAMINE G - 79
1k3s_A_691k3s   A     MSESELENOMETHIONINE T - 77
1k3s_A_691k3s   A     MSESELENOMETHIONINE A - 78
1k3s_A_691k3s   A     MSESELENOMETHIONINE L - 79
1k3s_A_691k3s   A     MSESELENOMETHIONINE V - 80
1k3s_A_691k3s   A     MSESELENOMETHIONINE A - 81
1k3s_A_691k3s   A     MSESELENOMETHIONINE L - 82
1k5n_A_1211k5n   A     GOLGLYCEROL D - 122
1k5n_A_1211k5n   A     GOLGLYCEROL A - 125
1k5n_A_1211k5n   A     GOLGLYCEROL N - 127
1k5n_A_1211k5n   A     GOLGLYCEROL T - 134
1l0q_A_2011l0q   A     MSESELENOMETHIONINE A - 201
1l0q_A_2011l0q   A     MSESELENOMETHIONINE P - 202
1l0q_A_2011l0q   A     MSESELENOMETHIONINE K - 213
1l0q_A_2011l0q   A     MSESELENOMETHIONINE A - 214
1l0q_A_2011l0q   A     MSESELENOMETHIONINE Y - 215
1l0q_A_2011l0q   A     MSESELENOMETHIONINE V - 216
1lwd_A_2911lwd   A     ICTISOCITRIC ACID S - 293
1lwd_A_2911lwd   A     ICTISOCITRIC ACID E - 306
1mzb_A_671mzb   A     ZNZINC ION H - 70
1mzb_A_671mzb   A     ZNZINC ION F - 72
1mzb_A_671mzb   A     ZNZINC ION D - 73
1mzb_A_671mzb   A     ZNZINC ION G - 74
1mzb_A_671mzb   A     ZNZINC ION G - 75
1mzb_A_671mzb   A     ZNZINC ION H - 76
1mzb_A_671mzb   A     ZNZINC ION E - 80
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE R - 317
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE A - 319
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE N - 321
1orv_A_3101orv   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 322
1qi9_A_4461qi9   A     IODIODIDE ION Y - 447
1qi9_A_4461qi9   A     IODIODIDE ION P - 448
1qi9_A_4461qi9   A     IODIODIDE ION D - 449
1qi9_A_4461qi9   A     IODIODIDE ION D - 450
1qi9_A_4461qi9   A     IODIODIDE ION I - 456
1qi9_A_4461qi9   A     IODIODIDE ION D - 457
1s18_A_2491s18   A     ACTACETATE ION L - 249
1s18_A_2491s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE D - 259
1s18_A_2491s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE I - 260
1s18_A_2491s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE A - 261
1s18_A_2491s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE V - 262
1s18_A_2491s18   A     TMNTRIS(HYDROXYMETHYL)AMINOMETHANE S - 263
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP D - 287
3pmg_A_2823pmg   A     MGMAGNESIUM ION D - 287
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP G - 288
3pmg_A_2823pmg   A     MGMAGNESIUM ION G - 288
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP D - 289
3pmg_A_2823pmg   A     MGMAGNESIUM ION D - 289
3pmg_A_2823pmg   A     MGMAGNESIUM ION G - 290
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP D - 291
3pmg_A_2823pmg   A     MGMAGNESIUM ION D - 291
3pmg_A_2823pmg   A     PHSPHOSPHONO GROUP R - 292
3pmg_A_2823pmg   A     MGMAGNESIUM ION R - 292

Clusters included in this Subclass
CLUSTER: HA.5.16
CLUSTER: HA.6.6
CLUSTER: HA.7.1