Information on SUBCLASS 5.20.1 |
Subclass Accession number: 744
Subclass: 5.20.1 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates: |
Number of loops: 6 Average sequence ID (%) : 15.6 +/- 16.1 Average RMSD (Å) : 0.883 +/- 0.366 Consensus geometry
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Consensus Sequence: | pXXhcppph |
(φψ)-conformation: | bbpplbabb |
Pattern: | [altv] | [ehkqt] | [fiptv] | [fk] | [FGPTV] | [DGNQ] | [AST] | [DKQT] | [rt] | [aiv] | [fivy] | [FTV] |
Conservation: | -0.505 | -0.818 | -1.169 | -0.546 | -1.473 | 0.709 | 2.191 | 0.498 | 0.295 | 0.490 | -0.229 | 0.558 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1e1a_A_270 | 1e1a | A | 273 | 284 | LHFKPQTKTIFV | EEE-TTSSEEEE | bbxxpvbaxbxb |
1hi9_A_238 | 1hi9 | A | 238 | 249 | TEIKTGTTTVQF | EEE-TTSSEEEE | bbxxpvbabbbb |
1j7x_A_245 | 1j7x | A | 247 | 258 | VFPFGDTQLSVT | EEE-TTSSEEEE | bbxxpvbabbbx |
1mu5_A_127 | 1mu5 | A | 130 | 141 | ETSPVNSKRIYT | EEE-TT-SEEEE | bbbppvxabbbb |
1oac_A_37 | 1oac | A | 39 | 50 | VKVKPGAQTAIV | EEE-TT-SEEEE | bbbbxvxabbbb |
1uyp_A_240 | 1uyp | A | 242 | 253 | AQTFFGTDRVVV | EEE-BS-SSEEE | pbbxxvbaxxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1e1a_A_270 | 1e1a | A | CACALCIUM ION | S - 271 |
1e1a_A_270 | 1e1a | A | CACALCIUM ION | N - 272 |
1e1a_A_270 | 1e1a | A | CACALCIUM ION | L - 273 |
1e1a_A_270 | 1e1a | A | CACALCIUM ION | H - 274 |
1e1a_A_270 | 1e1a | A | CACALCIUM ION | F - 275 |
1j7x_A_245 | 1j7x | A | MSESELENOMETHIONINE | S - 245 |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1e1a_A_270 | 1e1a | A | DFPDFP BINDING SITE | S - 271 |
1e1a_A_270 | 1e1a | A | AC2CA BINDING SITE FOR CHAIN A | L - 273 |
1e1a_A_270 | 1e1a | A | AC2CA BINDING SITE FOR CHAIN A | H - 274 |
1uyp_A_240 | 1uyp | A | AC2SO4 BINDING SITE FOR CHAIN A | T - 248 |
1uyp_A_240 | 1uyp | A | AC2SO4 BINDING SITE FOR CHAIN A | D - 249 |
1uyp_A_240 | 1uyp | A | AC2SO4 BINDING SITE FOR CHAIN A | R - 250 |
Clusters included in this Subclass |
CLUSTER: HA.4.72 |
CLUSTER: HA.5.83 |