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Information on SUBCLASS 5.3.4
Subclass Accession number: 713
Subclass: 5.3.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 12.0 +/- 15.2
Average RMSD (Å) : 0.500 +/- 0.187

Consensus geometry
d (Å): 5 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XXXXpGpph
(φψ)-conformation: bbpaalpbb
Pattern: x[LPTV][ADNTV][AKRS][DENT][DG][dkrt][hk][ltvy]x
Conservation:-0.746-0.220-0.6060.1730.7072.472-0.7460.178-0.431-0.781
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b5e_A_251b5e   A2534VVDKTGVKTIEE-TTS-EEEbxxaavxxbb
1cv8_*_1561cv8   -157166IPVSNGDHYQEE-TTS-EEExwbaavxbbx
1fp3_A_3611fp3   A361370YLNREGKVALEE-TTS-EEEbbxaavxxab
1hms_*_701hms   -7281ETTADDRKVKEE-TT--EEEbbxaavxbbb
1odm_A_2011odm   A201210KTAADGTKLSEE-TTS-EEEbbxaavxxba
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b5e_A_251b5e   A     DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE D - 27
1b5e_A_251b5e   A     DCM2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE K - 28
1cv8_*_1561cv8   *     E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE Y - 168
1hms_*_701hms   *     OLAOLEIC ACID T - 74
1hms_*_701hms   *     OLAOLEIC ACID A - 75
1hms_*_701hms   *     OLAOLEIC ACID D - 76
1hms_*_701hms   *     OLAOLEIC ACID R - 78
1odm_A_2011odm   A     ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE F - 211
1odm_A_2011odm   A     FE2FE (II) ION F - 211
1odm_A_2011odm   A     ASVDELTA-(L-ALPHA-AMINOADIPOYL)-L-CYSTEINYL-D-VINYLGLYCINE H - 214
1odm_A_2011odm   A     FE2FE (II) ION H - 214
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1odm_A_2011odm   A AC5FE2 BINDING SITE FOR CHAIN AH - 214

Clusters included in this Subclass
CLUSTER: HA.4.108
CLUSTER: HA.5.95