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Information on SUBCLASS 5.4.1
Subclass Accession number: 6362
Subclass: 5.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 30

Average sequence ID (%) : 14.6 +/- 16.7
Average RMSD (Å) : 0.510 +/- 0.183

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXpXpGXXX
(φψ)-conformation: bbpaalppb
Pattern: xx[adgnqst][adeknqrst][dehknsty][gnq]xxx
Conservation:-0.642-0.5380.293-0.1790.2872.468-0.440-0.749-0.499
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a88_A_21a88   A311VTTSDGTNIEE-TTS-EEbxxaavxxb
1a8q_*_21a8q   -311CTTRDGVEIEE-TTS-EEbxxaavxxb
1a8s_*_21a8s   -311FTTRDGTQIEE-TTS-EEbbxaavxxx
1d8c_A_3461d8c   A349357IWDSEGNEIEE-TTS-EEbbxaavxxx
1dpj_A_2381dpj   A238246KKGWTGQYTEE-TTSSEEbxbaavbxb
1e4e_A_2861e4e   A294302FLQDNGRIVEE-TT--EEbbxaavxxb
1e6y_B_22791e6y   B22832291KTAPSGYNFEE-TTS-EEbbxaavxxx
1e79_A_521e79   A5361VEFSSGLKGEEETTS-EEbbxaagxxb
1eag_A_2411eag   A243251TQDSNGNSFEE-TTS-EEbbxaavxxb
1ehi_A_2981ehi   A305313LLDENNVPYEE-TT--EEbbxaavxwb
1f61_A_2491f61   A252260ERTREGFYREE-TTS-EExbxaavxxx
1goi_A_461goi   A5361DINSNLECAEE-TTSSEEbbxaavbxb
1gt1_A_631gt1   A7280TKQDDGTYVEE-TTS-EEbxbaagxbb
1igw_A_2531igw   A256264ERTSEGFFREE-TTS-EExbxaavxbx
1itw_A_3621itw   A363371MWGPDGKLHEE-TTSSEEbxbaavbxb
1jsg_*_251jsg   -2634YLDEKQHAWEEETT--EEbbbaavxxb
1khb_A_3831khb   A383391ITSWKNKEWEE-TTSSEEbbxaavbxb
1kxr_A_2621kxr   A262270AITFKNLVREE-TTS-EEbxbaalbbx
1nar_*_321nar   -4351SYYESGKGTEE-TTS-EExbxaavxxa
1p1j_A_1141p1j   A118126GIDAEGNDVEE-TTS-EEebxaavbpb
1p3c_A_1741p3c   A175183MLDQNQQIVEE-TTS-EExbxaavxxa
1pz5_B_881pz5   B94102RGGAVGAMDEE-TTSSEExxxaavbxa
1rzt_A_5371rzt   A537545VRNTHGCKVEE-TT--EExbbaalbpa
1skz_*_411skz   -4250QRSRYGCEFEE-TTS-EExbxaagbxb
1skz_*_961skz   -97105KRDKLGCEYEE-TTS-EExbxaavbxb
1ulz_A_2691ulz   A276284IADQEGNLYEE-TT--EEbbxaavxbb
2ayh_*_392ayh   -4048NFTNDGKLKEE-TTS-EEbbxaavbxb
2nap_A_2502nap   A253261FMDAEGKPSEE-TTS-EEbbxaavxpb
2ptd_*_652ptd   -7179RLTDDNTIVEE-TTS-EEbxbaavbbb
3pvi_A_593pvi   A5967AVDNAGQEYEE-TT--EEbbxaavxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d8c_A_3461d8c   A     MSESELENOMETHIONINE I - 346
1d8c_A_3461d8c   A     MSESELENOMETHIONINE I - 357
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE R - 290
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 290
1e4e_A_2861e4e   A     MGMAGNESIUM ION R - 290
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE D - 292
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 292
1e4e_A_2861e4e   A     MGMAGNESIUM ION D - 292
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE F - 294
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 304
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 304
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 304
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE E - 305
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION E - 305
1e4e_A_2861e4e   A     MGMAGNESIUM ION V - 306
1e4e_A_2861e4e   A     ADPADENOSINE-5'-DIPHOSPHATE N - 307
1e4e_A_2861e4e   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 307
1e4e_A_2861e4e   A     MGMAGNESIUM ION N - 307
1ehi_A_2981ehi   A     MGMAGNESIUM ION R - 301
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID R - 301
1ehi_A_2981ehi   A     MGMAGNESIUM ION D - 303
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE D - 303
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID D - 303
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE L - 305
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE G - 315
1ehi_A_2981ehi   A     MGMAGNESIUM ION E - 316
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE E - 316
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID E - 316
1ehi_A_2981ehi   A     MGMAGNESIUM ION P - 317
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID P - 317
1ehi_A_2981ehi   A     MGMAGNESIUM ION N - 318
1ehi_A_2981ehi   A     ADPADENOSINE-5'-DIPHOSPHATE N - 318
1ehi_A_2981ehi   A     PHY1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID N - 318
1goi_A_461goi   A     GOLGLYCEROL F - 51
1gt1_A_631gt1   A     ANCANTHRACEN-1-YLAMINE V - 69
1gt1_A_631gt1   A     ANCANTHRACEN-1-YLAMINE A - 71
1gt1_A_631gt1   A     ANCANTHRACEN-1-YLAMINE A - 81
1igw_A_2531igw   A     HGMERCURY (II) ION S - 259
1igw_A_2531igw   A     HGMERCURY (II) ION E - 260
1igw_A_2531igw   A     HGMERCURY (II) ION G - 261
2ayh_*_392ayh   *     CACALCIUM ION D - 44
2ayh_*_392ayh   *     CACALCIUM ION G - 45
2ayh_*_392ayh   *     CACALCIUM ION K - 46
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4e_A_2861e4e   A AC1PHY BINDING SITE FOR CHAIN AR - 290
2ptd_*_652ptd   * ACTACTIVE SITE.H - 82
3pvi_A_593pvi   A CA1CATALYTIC RESIDUES-FIRST MONOMERE - 68
3pvi_A_593pvi   A CA1CATALYTIC RESIDUES-FIRST MONOMERK - 70

Clusters included in this Subclass
CLUSTER: HA.4.53
CLUSTER: HA.4.57
CLUSTER: HA.5.196
CLUSTER: HA.5.54
CLUSTER: HA.6.30
CLUSTER: HA.6.96