Information on SUBCLASS 5.4.2 |
Subclass Accession number: 6363
Subclass: 5.4.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates: Conserved Annotation EC : 1.3 (>50 %) 1.3.99 (>50 %) 1.3.99.1 SCOP : 51904 (>50 %) 51905 (>50 %) 51934 (>50 %) |
Number of loops: 16 Average sequence ID (%) : 15.2 +/- 17.0 Average RMSD (Å) : 0.556 +/- 0.363 Consensus geometry
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Consensus Sequence: | XXXXchpXX |
(φψ)-conformation: | bbpaalpbb |
Pattern: | x | x | x | [adegkrst] | [aden] | [egs] | [hnrsty] | [cfgiklt] | x | [cfilmvwy] |
Conservation: | -0.577 | -0.812 | -0.539 | -0.438 | 2.175 | 1.458 | 0.097 | -0.551 | -0.512 | -0.300 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1acc_*_639 | 1acc | - | 646 | 655 | IEDTEGLKEV | EE-TTS-EEE | bbxaavxbbx |
1amu_A_407 | 1amu | A | 416 | 425 | RWLSDGNIEY | EE-TTS-EEE | bxxaavxxbx |
1aun_*_44 | 1aun | - | 53 | 62 | NFDGAGRGWC | EE-TTSBEEE | bbxaavbbbb |
1b6r_A_160 | 1b6r | A | 167 | 176 | ARGFDGSTVF | EE-TTS-EEE | bbbaavxbbb |
1d3b_A_27 | 1d3b | A | 34 | 43 | EAEDNMNCQM | EE-TT--EEE | bbbaavxbxb |
1d3b_L_26 | 1d3b | L | 33 | 42 | AFDKHMNLIL | EE-TT--EEE | bbbaavxbbb |
1g9g_A_450 | 1g9g | A | 450 | 459 | KFNADGTFQI | EE-TTS-EEE | bbxaavxbbb |
1l1y_A_478 | 1l1y | A | 478 | 487 | KLYDDGTFAI | EE-TTS-EEE | bbbaavxbbb |
1lci_*_418 | 1lci | - | 425 | 434 | YWDEDEHFFI | EE-TT--EEE | bbxaavxxbx |
1lqy_A_72 | 1lqy | A | 77 | 86 | VTDENGTLYS | EE-TTS-EEE | bbxaavxxbb |
1m6k_A_199 | 1m6k | A | 201 | 210 | QDLDNSTKLY | EE-TTS-EEE | bbxaavxxbb |
1mdb_A_409 | 1mdb | A | 416 | 425 | RLTRDGYIVV | EE-TTS-EEE | bbxaavxbbx |
1oew_A_67 | 1oew | A | 76 | 85 | ISYGDGSSSS | EE-TTS-EEE | bbbaavxbbb |
1qho_A_646 | 1qho | A | 653 | 662 | IKRADGTIQW | EE-TTS-EEE | xbxaavxbbx |
1ry2_A_555 | 1ry2 | A | 562 | 571 | AKDKDGYIWI | EE-TT--EEE | bbxaavpbbx |
2ncd_A_474 | 2ncd | A | 482 | 491 | LEIYNEVLYD | EEESSS-EEE | bbbaavbxbx |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1oew_A_67 | 1oew | A | AC2THR BINDING SITE FOR CHAIN A | S - 77 |
1oew_A_67 | 1oew | A | AC1SER BINDING SITE FOR CHAIN A | Y - 78 |
1oew_A_67 | 1oew | A | AC1SER BINDING SITE FOR CHAIN A | G - 79 |
Clusters included in this Subclass |
CLUSTER: HA.5.47 |
CLUSTER: HA.6.94 |