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Information on SUBCLASS 5.4.9
Subclass Accession number: 6370
Subclass: 5.4.9 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 50198 (>50 %)  50203 (>50 %)  50204 (>50 %)  
 Number of loops: 3

Average sequence ID (%) : 26.7 +/- 36.1
Average RMSD (Å) : 0.400 +/- 0.173

Consensus geometry
d (Å): 3 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pppppcphp
(φψ)-conformation: bbpaalpbb
Pattern: [ET][FVY]x[KT][EY][NS][DES][DS][DN][KT][FL][ST][LV][EK][GV]
Conservation:-0.396-0.306-1.793-0.396-0.2141.085-0.3060.4261.916-0.3960.4260.6640.2440.923-1.876
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c4q_A_1031c4q   A110124EYTKYNDDDTFTVKVEEEEE-TTS-EEEEEabbbxbaavxbbbbb
1f3u_A_941f3u   A94108TVFTESSSDKLSLEGEEEEE-TT--EEEEEbbbbbxaavxbbxae
2bos_A_1032bos   A110124EFSKYNEDNTFTVKVEEEEE-TTS-EEEEEabbbxxaavxbbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c4q_A_1031c4q   A     GALD-GALACTOSE D - 116
2bos_A_1032bos   A     GALD-GALACTOSE K - 113
2bos_A_1032bos   A     GALD-GALACTOSE N - 115
2bos_A_1032bos   A     GALD-GALACTOSE E - 116
2bos_A_1032bos   A     GALD-GALACTOSE D - 117
2bos_A_1032bos   A     GLCGLUCOSE D - 117
2bos_A_1032bos   A     GALD-GALACTOSE T - 119
2bos_A_1032bos   A     GALD-GALACTOSE T - 121

Clusters included in this Subclass
CLUSTER: HA.4.260